KEGG T00041: AT1G49250

Arabidopsis thaliana (thale cress): AT1G49250

Entry

AT1G49250 CDS T00041

Definition

ATP-dependent DNA ligase

Orthology

K10747

DNA ligase 1 [EC:6.5.1.1]

Organism

ath Arabidopsis thaliana (thale cress)

Pathway

ath03030	DNA replication
ath03410	Base excision repair
ath03420	Nucleotide excision repair
ath03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:ath03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:ath03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:ath03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:ath03430]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DUF1126 CENP-S

Other DBs

NCBI-GI:

NCBI-GeneID:

MIPS:

TAIR:

UniProt:

Position

AA seq 657 aa
MSNASAKKKRKLEETVDTPPTRVDDKTLVLISDSKKPKSDRVTKLKSKIGLLKKKPTESG
RIVITHILCNMLRTVIATTPDDLLPTVYLAANEIAPAHEGIKLGMGKGSYIIKAISEAFG
RTESHVEQQYTQLGDLGLVANGSRSSQTMIFMPKPLTVVKVADTLRLIAKESGKGSKDKK
KDLMKALLVATTDCEPLYLTRLLQDNLRLGFSRQTVLAALGQAAVYNEEHSKPPPNIKNP
LDEAATIVKEVFSMLPVYDIIVGALLTSGVWNLPKTCNLTLGVPVRPMLAKATTRVDLIL
EKFKDTVFTAEYKYDGERAQIYYMEDGTVEIFSRHAERNTGKYPDVALVLSRLKKPTVKS
FILDCEVVTFNREKEKILPLQSTRAHKNVNVSDIKVGVCVFAFDILYLNGQLLIHENLNI
RREKLHDSFEEDLGYFQFATALTSNDIGELQEFLKASIDIGCEGLMIKSLYSNATYEPAK
RSNNWLKLKKDYMDNIGDSVDLVPIATFHGRGKRTGFFGAYLLACYDVDKEEFQSICKIG
TEFSDVELQDLSSSLCSKVIATPKQYYQVDNDLNPDVWLEPTEVWEVKAADLTVSPVYRE
AIGIVDPDKGISLRFPRLVRIRKDKNPEEATTSDQIAEMYQAQKHNQPSNQGKVDDD

NT seq 1974 nt +upstreamnt +downstreamnt
atgtcgaatgcttccgccaagaagaagagaaaactcgaggaaaccgtagatacgccaccg
actagggttgatgacaaaaccctagttcttatttctgattcgaaaaaacccaaatcagat
agggttaccaaactgaagagcaaaattgggttgctgaagaagaagccaactgaaagtggc
aggattgtcatcactcatattctgtgtaacatgttgagaaccgttatcgccactactcct
gatgatttgctacctactgtttatcttgctgcaaatgagattgcccctgctcatgaaggt
attaaattgggaatgggtaagggttcctacattattaaggcaatctctgaagcttttggt
agaactgagtcccacgttgagcagcaatatacgcaactgggagacttggggcttgtagca
aatgggagccgttcctctcagactatgattttcatgcccaaaccattaactgttgtcaag
gttgctgatacacttcgcctaattgctaaggaatctggaaaaggtagtaaggataagaag
aaggatctaatgaaggcacttcttgtggcaactacagattgtgaacctctttacttaact
cgtttacttcaggataatttgcggttagggttctcacgtcaaactgttttagctgccttg
ggacaggctgctgtatataacgaagagcattctaagccgcccccaaatatcaagaatcct
ttagatgaggctgcaacgattgttaaagaagtattctcaatgcttcctgtctatgacatt
attgttggtgctcttctaactagtggtgtatggaatcttcctaaaacttgtaacctcaca
ctcggtgttccagttaggcccatgcttgcaaaagcaactacaagagtagatctcatactt
gagaaattcaaggacactgttttcacagctgaatacaaatatgatggtgaacgtgcacag
atatattatatggaggatggtacagtcgagatattcagtagacatgctgaaagaaacact
ggcaagtaccctgatgttgctcttgtgttatcaaggttaaagaagcccactgtgaaatct
tttattctggattgcgaggttgtcaccttcaacagagaaaaagagaaaattcttccactc
cagagtacacgagcccataaaaatgtgaatgtcagtgatatcaaggttggcgtatgcgtc
tttgcttttgatatattatacctaaatggccaactacttatccatgagaatctgaacatt
cgccgagagaagctacacgattcatttgaggaagatcttgggtatttccagtttgcaact
gctctaacatccaacgatattggtgaattacaagagtttcttaaagcttctattgacata
ggatgtgaaggtttaatgataaagtcattgtactcaaatgcaacctatgagcctgcaaag
agatcaaataattggctaaaactgaagaaggactatatggacaacattggagattccgtg
gatcttgtaccaatagctacgttccatggacgtgggaaacgcacaggtttctttggtgca
tatttactagcgtgctacgatgttgataaggaagaattccagagcatttgtaaaattggt
actgaattttctgatgtggagcttcaagatttgtcttccagtctttgctctaaagtgatt
gctactccgaaacaatactaccaagtcgataacgatctcaatccagatgtctggttggag
cccaccgaggtgtgggaagtgaaagcagctgacttgacagttagccctgtatatcgtgaa
gctattggaattgtggaccctgacaagggaatttctctacgatttcctcgtctagtccgt
atacggaaagacaagaatccagaggaagcaacaacatctgaccagattgctgaaatgtat
caagctcagaaacacaatcaaccaagcaatcaaggcaaagtggacgacgattga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   UniGene (1)   
   MIPS-ATH (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (22)   

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