KEGG   Arabidopsis thaliana (thale cress): AT2G29210
Entry
AT2G29210         CDS       T00041                                 
Name
(RefSeq) splicing factor PWI domain-containing protein
  KO
K13171  serine/arginine repetitive matrix protein 1
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03013  Nucleocytoplasmic transport
ath03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    AT2G29210
   03015 mRNA surveillance pathway
    AT2G29210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT2G29210
   03041 Spliceosome [BR:ath03041]
    AT2G29210
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     AT2G29210
Spliceosome [BR:ath03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   SR-related proteins
    AT2G29210
SSDB
Motif
Pfam: PWI
Other DBs
NCBI-GeneID: 817470
NCBI-ProteinID: NP_001324350
TAIR: AT2G29210
UniProt: A0A1P8AZU5
Position
2:12557979..12562367
AA seq 859 aa
MSGGFFRGTSAEQDTRFSNKQAKLMKSQKFAPELENLVDITKVKMDVMKPWIATRVTELL
GIEDEVLINFIYGLLDGKVVNGKEIQITLTGFMEKNTGKFMKELWTLLLSAQNNPSGVPQ
QFLDARAAETKKKQEEANEIMKKREGDKKNIEHDILRKIDSGVEHKETNGMDAKPSRDRP
EDGRRADEKNGVKERRRDLIPPRRGDASRSPLRGSRSRSISKTNSGSKSYSGERKSRSTS
QSSDASISPRKRRLSNSRRRSRSRSVRRSLSPRRRRIHSPFRSRSRSPIRRHRRPTHEGR
RQSPAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSPSPPARRH
RSPPPARRRRSPSPPARRRRSPSPPARRRRSPSPLYRRNRSPSPLYRRNRSRSPLAKRGR
SDSPGRSPSPVARLRDPTGARLPSPSIEQRLPSPPVAQRLPSPPPRRAGLPSPMRIGGSH
AANHLESPSPSSLSPPGRKKVLPSPPVRRRRSLTPDEERVSLSQGGRHTSPSHIKQDGSM
SPVRGRGKSSPSSRHQKARSPVRRRSPTPVNRRSRRSSSASRSPDRRRRRSPSSSRSPSR
SRSPPVLHRSPSPRGRKHQRERRSPGRLSEEQDRVQNSKLLKRTSVPDTDKRKQLPEKLL
EVGRVEHYKEQERKSDKLSEKRSVHRHHGSQMSPVENSEGRSRPVSSKVKDSEQVEKEDN
SDLDANLSCDSKDTIRHQIKDKNRRKNKRSSREEVSSDDNGSSDSDVDDRKEAKRRRKEE
KKTRKEEKKRRREERHRKREERRGGKEKHKKQELSDTSEGEVEARPKIKKGEESDPKRLE
IELRNKALESLKAKKGISH
NT seq 2580 nt   +upstreamnt  +downstreamnt
atgtccggcggtttcttccggggtacttccgccgagcaggatactcggttttctaacaag
caagctaaattgatgaaaagccagaaatttgctccggagttagagaatctggtggatatc
actaaagtgaagatggatgttatgaaaccttggattgcgactagagtcactgagcttctt
ggtattgaagatgaagtgctgattaactttatctatggtctgcttgacgggaaggtagtg
aatggtaaggagattcagataacgctaactggattcatggagaaaaatactggcaaattt
atgaaagaactttggacacttcttctaagcgcacagaataatccaagtggtgttccacag
cagtttttagatgctagagctgctgaaacaaagaagaaacaggaagaagcaaatgaaata
atgaagaagagggagggagataagaagaacattgagcacgatatattgaggaaaatagac
agcggtgtagaacataaggagacaaatggcatggatgcaaaaccttcaagagatcgtcca
gaggatgggagaagggctgacgagaagaatggtgtaaaagaaaggagaagggatctgata
cctccacgtcgcggagatgcatcccgctcaccccttagagggtcacgttctaggtcaatc
agcaaaacaaattcaggctcgaaaagttattctggcgaacggaaatccaggagcacatct
caatcatcagatgcctccatctcacctagaaagcgaagattgtcgaattcaagacgtaga
tccagatcacgttccgtgcgtaggtctctgtctcctcggcgacgtaggatacactctcct
ttcagaagcaggtcgcggtcacctattagacgtcacaggcgacctacgcatgagggacgc
cgtcaatcaccagccccttcaagacgtcgccgttctccatccccacctgctagacggcgc
aggtcaccatccccacctgctagacggcgcaggtcaccatcaccacctgctagacggcac
aggtctccaacaccacctgcaaggcagcgcaggtcaccatcgccccctgctaggcgtcac
cgttctccaccgccagctaggcggcgtaggtctccttcaccgccagctaggcggcgtagg
tctccttcaccgccagctaggcggcgtaggtctccatctccactctacaggcgtaacagg
tctccatctccactctataggcgtaacaggtcacggtcaccgctggctaagcggggaagg
tctgactcaccagggaggtctccgtcaccagtggctaggctcagggatcccactggggca
agattgccttcaccatccattgagcaaagattgccttcaccacccgttgcacaaaggttg
ccttcaccaccccctaggcgtgcaggattaccttcaccaatgaggattggaggatctcat
gcagccaatcacctggaatcaccatcacccagctcattgtcccctcctggtaggaaaaaa
gtgttaccatctccacctgttagaagacgcaggtcactgacacctgacgaagagcgagtc
tccctgtcacaaggtggacgccatacttccccttcacatatcaagcaagatggatctatg
tcacctgttaggggtcgaggtaaatcttctccttcatctcgacatcagaaagcgcgctct
cctgttcggcgcagatcaccaacacctgtcaaccggcgaagtcgaagatcttcatctgct
tcacgatcacctgatagacgcaggagacggtctccatcttcgagcagatctccttctagg
tcgcgatcacctcctgttcttcatagatctccttctccacgtggaagaaaacatcagaga
gagagaagatctcctgggcgtctatctgaagaacaagatagggttcaaaattccaagctg
ttaaagagaacttcagtgcctgatactgacaagaggaaacaattaccagagaagttgcta
gaagttgggcgtgtagaacattataaggagcaggagagaaagagtgataagttgtcagag
aagcgatctgttcacagacaccatggttcacagatgtccccagtagaaaattcagaagga
aggagtcggcctgtttctagtaaagtgaaagacagtgagcaggttgagaaagaggataac
agcgacctggatgcaaacctttcctgtgattctaaggataccatcagacatcaaattaag
gataaaaatagaagaaagaataaaaggtcttcaagggaagaagtatcttcagatgataat
ggcagttctgattccgacgtagatgataggaaggaggctaaaaggaggaggaaggaggag
aagaaaacgagaaaggaggagaagaaacgtaggcgagaggagagacatcgtaaaagggaa
gaacgtcgtggtggaaaggagaagcataagaaacaagagctttctgatacttcagaaggt
gaagttgaggcccgtcctaagattaaaaaaggggaggaatctgatccaaagaggcttgaa
attgagttgcgaaacaaagcactcgagtcattgaaagcaaagaagggcattagccactaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (741)   
   KEGG ORTHOLOGY (1)   
   RefGene (734)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (753)   

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