KEGG   Arabidopsis thaliana (thale cress): AT5G04560
Entry
AT5G04560         CDS       T00041                                 
Symbol
DME
Name
(RefSeq) HhH-GPD base excision DNA repair family protein
Organism
ath  Arabidopsis thaliana (thale cress)
SSDB
Motif
Pfam: RRM_DME Perm-CXXC HhH-GPD
Other DBs
NCBI-GeneID: 830335
NCBI-ProteinID: NP_001078527
TAIR: AT5G04560
UniProt: Q8LK56
Position
5:1309099..1318520
AA seq 1987 aa
MNSRADPGDRYFRVPLENQTQQEFMGSWIPFTPKKPRSSLMVDERVINQDLNGFPGGEFV
DRGFCNTGVDHNGVFDHGAHQGVTNLSMMINSLAGSHAQAWSNSERDLLGRSEVTSPLAP
VIRNTTGNVEPVNGNFTSDVGMVNGPFTQSGTSQAGYNEFELDDLLNPDQMPFSFTSLLS
GGDSLFKVRQYGPPACNKPLYNLNSPIRREAVGSVCESSFQYVPSTPSLFRTGEKTGFLE
QIVTTTGHEIPEPKSDKSMQSIMDSSAVNATEATEQNDGSRQDVLEFDLNKTPQQKPSKR
KRKFMPKVVVEGKPKRKPRKPAELPKVVVEGKPKRKPRKAATQEKVKSKETGSAKKKNLK
ESATKKPANVGDMSNKSPEVTLKSCRKALNFDLENPGDARQGDSESEIVQNSSGANSFSE
IRDAIGGTNGSFLDSVSQIDKTNGLGAMNQPLEVSMGNQPDKLSTGAKLARDQQPDLLTR
NQQCQFPVATQNTQFPMENQQAWLQMKNQLIGFPFGNQQPRMTIRNQQPCLAMGNQQPMY
LIGTPRPALVSGNQQLGGPQGNKRPIFLNHQTCLPAGNQLYGSPTDMHQLVMSTGGQQHG
LLIKNQQPGSLIRGQQPCVPLIDQQPATPKGFTHLNQMVATSMSSPGLRPHSQSQVPTTY
LHVESVSRILNGTTGTCQRSRAPAYDSLQQDIHQGNKYILSHEISNGNGCKKALPQNSSL
PTPIMAKLEEARGSKRQYHRAMGQTEKHDLNLAQQIAQSQDVERHNSSTCVEYLDAAKKT
KIQKVVQENLHGMPPEVIEIEDDPTDGARKGKNTASISKGASKGNSSPVKKTAEKEKCIV
PKTPAKKGRAGRKKSVPPPAHASEIQLWQPTPPKTPLSRSKPKGKGRKSIQDSGKARGPS
GELLCQDSIAEIIYRMQNLYLGDKEREQEQNAMVLYKGDGALVPYESKKRKPRPKVDIDD
ETTRIWNLLMGKGDEKEGDEEKDKKKEKWWEEERRVFRGRADSFIARMHLVQGDRRFSPW
KGSVVDSVIGVFLTQNVSDHLSSSAFMSLAARFPPKLSSSREDERNVRSVVVEDPEGCIL
NLNEIPSWQEKVQHPSDMEVSGVDSGSKEQLRDCSNSGIERFNFLEKSIQNLEEEVLSSQ
DSFDPAIFQSCGRVGSCSCSKSDAEFPTTRCETKTVSGTSQSVQTGSPNLSDEICLQGNE
RPHLYEGSGDVQKQETTNVAQKKPDLEKTMNWKDSVCFGQPRNDTNWQTTPSSSYEQCAT
RQPHVLDIEDFGMQGEGLGYSWMSISPRVDRVKNKNVPRRFFRQGGSVPREFTGQIIPST
PHELPGMGLSGSSSAVQEHQDDTQHNQQDEMNKASHLQKTFLDLLNSSEECLTRQSSTKQ
NITDGCLPRDRTAEDVVDPLSNNSSLQNILVESNSSNKEQTAVEYKETNATILREMKGTL
ADGKKPTSQWDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNML
AVRIKDFLERIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFP
VDTNVGRIAVRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQ
LITFGKVFCTKSRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYP
PVAIPMIELPLPLEKSLASGAPSNRENCEPIIEEPASPGQECTEITESDIEDAYYNEDPD
EIPTIKLNIEQFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEH
QVYELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDET
CSECNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDW
IWDLPRRTVYFGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPAS
KLKNNKT
NT seq 5964 nt   +upstreamnt  +downstreamnt
atgaattcgagggctgatccgggggatagatattttcgagttcctttggagaatcaaact
caacaagagttcatgggttcttggattccatttacacccaaaaaacctagatcaagtctg
atggtagatgagagagtgataaaccaggatctaaatgggtttccaggtggtgaatttgta
gacaggggattctgcaacactggtgtggatcataatggggtttttgatcatggtgctcat
cagggcgttaccaacttaagtatgatgatcaatagcttagcgggatcacatgcacaagct
tggagtaatagtgagagagatcttttgggcaggagtgaggtgacttctcctttagcacca
gttatcagaaacaccaccggtaatgtagagccggtcaatggaaattttacttcagatgtg
ggtatggtaaatggtcctttcacccagagtggcacttctcaagctggctataatgagttt
gaattggatgacttgttgaatcctgatcagatgcccttctccttcacaagcttgctgagt
ggtggggatagcttattcaaggttcgtcaatatggacctccagcgtgtaacaagcctctt
tacaatttgaattcaccaattagaagagaagcagttgggtcagtctgtgaaagttcgttt
caatatgtaccgtcaacgcccagtctgttcagaacaggtgaaaagactggattccttgaa
cagatagttacaactactggacatgaaatcccagagccgaaatctgacaaaagtatgcag
agcattatggactcgtctgctgttaatgcgacggaagctactgaacaaaatgatggcagc
agacaagatgttctggagttcgaccttaacaaaactcctcagcagaaaccctccaaaagg
aaaaggaagttcatgcccaaggtggtcgtggaaggcaaacctaaaagaaagccacgcaaa
cctgcagaacttcccaaagtggtcgtggaaggcaaacctaaaaggaagccacgcaaagct
gcaactcaggaaaaagtgaaatctaaagaaaccgggagtgccaaaaagaaaaatttgaaa
gaatcagcaactaaaaagccagccaatgttggagatatgagcaacaaaagccctgaagtc
acactcaaaagttgcagaaaagctttgaattttgacttggagaatcctggagatgcgagg
caaggtgactctgagtctgaaattgtccagaacagtagtggcgcaaactcgttttctgag
atcagagatgccattggtggaactaatggtagtttcctggattcagtgtcacaaatagac
aagaccaatggattgggggctatgaaccagccacttgaagtgtcaatgggaaaccagcca
gataaactatctacaggagcgaaactggccagagaccaacaacctgatttattgactaga
aaccagcaatgccagttcccagtggcaacccagaacacccagttcccaatggaaaaccaa
caagcttggcttcagatgaaaaaccaacttattggctttccatttggtaaccagcaacct
cgcatgaccataagaaaccagcagccttgcttggccatgggtaatcaacaacctatgtat
ctgataggaactccacggcctgcattagtaagtggaaaccagcaactaggaggtccccaa
ggaaacaagcggcctatatttttgaatcaccagacttgtttacctgctggaaatcagcta
tatggatcacctacagacatgcatcaacttgttatgtcaaccggagggcaacaacatgga
ctactgataaaaaaccagcaacctggatcattaataagaggccagcagccttgcgtacct
ttgattgaccagcaacctgcaactccaaaaggttttactcacttgaatcagatggtagct
accagcatgtcatcgcctgggcttcgacctcattctcagtcacaagttcctacaacatat
ctacatgtggaatctgtttccaggattttgaatgggactacaggtacatgccagagaagc
agggctcctgcatacgattctttacagcaagatatccatcaaggaaataagtacatactt
tctcatgagatatccaatggtaatgggtgcaagaaagcgttacctcaaaactcttctctg
ccaactccaattatggctaaacttgaggaagccaggggctcgaagagacagtatcatcgt
gcaatgggacagacggaaaagcatgatctaaacttagctcaacagattgctcaatcacaa
gatgtggagagacataacagcagcacgtgtgtggaatatttagatgctgcaaagaaaacg
aaaatccagaaagtagtccaagaaaatttgcatggcatgccacctgaggttatagaaatc
gaggatgatccaactgatggggcaagaaaaggtaaaaatactgccagcatcagtaaaggt
gcatctaaaggaaactcgtctccagttaaaaagacagcagaaaaggagaaatgtattgtc
ccaaaaacgcctgcaaaaaagggtcgagcaggtagaaaaaaatcagtacctccgcctgct
catgcctcagagatccagctttggcaacctactcctccaaagacacctttatcaagaagc
aagcctaaaggaaaagggagaaagtccatacaagattcaggaaaagcaagaggtccatca
ggagaacttctgtgtcaggattctattgcggaaataatttacaggatgcaaaatctgtat
ctaggagacaaagaaagagaacaagagcaaaatgcaatggtcttgtacaaaggagatggt
gcacttgttccctatgagagcaagaagcgaaaaccaagacccaaagttgacattgacgat
gaaacaactcgcatatggaacttactgatggggaaaggagatgaaaaagaaggggatgaa
gagaaggataaaaagaaagagaagtggtgggaagaagaaagaagagtcttccgaggaagg
gctgattccttcatcgctcgcatgcacctggtacaaggagatagacgtttttcgccatgg
aagggatcggtggttgattcggtcattggagttttccttacacagaatgtctcggatcac
ctttcaagctctgcgttcatgtctctagctgctcgattccctccaaaattaagcagcagc
cgagaagatgaaaggaatgttagaagcgtagttgttgaagatccagaaggatgcattctg
aacttaaatgaaattccttcgtggcaggaaaaggttcaacatccatctgacatggaagtt
tctggggttgatagtggatcaaaagagcagctaagggactgttcaaactctggaattgaa
agatttaatttcttagagaagagtattcaaaatttagaagaggaagtattatcatcacaa
gattcttttgatccggcgatatttcagtcgtgtgggagagttggatcctgttcatgttcc
aaatcagacgcagagtttcctacaaccaggtgtgaaacaaaaactgtcagtggaacatca
caatcagtgcaaactgggagcccaaacttgtctgatgaaatttgtcttcaagggaatgag
agaccgcatctatatgaaggatctggtgatgttcagaaacaagaaactacaaatgtcgct
cagaagaaacctgatcttgaaaaaacaatgaattggaaagactctgtctgttttggtcag
ccaagaaatgatactaattggcaaacaactccttccagcagctatgagcagtgtgcgact
cgacagccacatgtactagacatagaggattttggaatgcaaggtgaaggccttggttat
tcttggatgtccatctcaccaagagttgacagagtaaagaacaaaaatgtaccacgcagg
tttttcagacaaggtggaagtgttccaagagaattcacaggtcagatcataccatcaacg
cctcatgaattaccaggaatgggattgtccggttcctcaagcgccgtccaagaacaccag
gacgatacccaacataatcaacaagatgagatgaataaagcatcccatttacaaaaaaca
tttttggatctgctcaactcctctgaagaatgccttacaagacagtccagtaccaaacag
aacatcacggatggctgtctaccgagagatagaactgctgaagacgtggttgatccgctc
agtaacaattcaagcttacagaacatattggtcgaatcaaattccagcaataaagagcag
acggcagttgaatacaaggagacaaatgccactattttacgagagatgaaagggacgctt
gctgatgggaaaaagcctacaagccagtgggatagtctcagaaaagatgtggaggggaat
gaagggagacaggaacgaaacaaaaacaatatggattccatagactatgaagcaataaga
cgtgctagtatcagcgagatttctgaggctatcaaggaaagagggatgaataacatgttg
gccgtacgaattaaggatttcctagaacggatagttaaagatcatggtggtatcgacctt
gaatggttgagagaatctcctcctgataaagccaaggactatctcttgagcataagaggt
ctgggtttgaaaagtgttgaatgcgtgcgactcttaacactccacaatcttgctttccct
gttgacacgaatgttggaaggatagcagttaggatgggatgggtgcctctacaaccccta
cctgaatcacttcagttacacctcctggagctatacccagtgctcgagtccatccaaaaa
tttctttggccaagactttgcaaactcgatcaacgaacactgtatgaattacactaccaa
ctgattacgtttggaaaggtattttgcacaaagagtagaccaaattgtaatgcatgtcca
atgagaggagagtgcagacactttgccagtgcttatgctagtgcaagacttgctttaccg
gcaccagaggagaggagcttaacaagtgcaactattccggtccctcccgagtcctatcct
cctgtagccatcccgatgatagaactacctcttccgttggagaaatccctagcaagtgga
gcaccatcgaatagagaaaactgtgaaccaataattgaagagccggcctcgcccgggcaa
gagtgcactgaaataaccgagagtgatattgaagatgcttactacaatgaggaccctgac
gagatcccaacaataaaactcaacattgaacagtttggaatgactctacgggaacacatg
gaaagaaacatggagctccaagaaggtgacatgtccaaggctttggttgctttgcatcca
acaactacttctattccaactcccaaactaaagaacattagccgtctcaggacagagcac
caagtgtacgagctcccagattcacatcgtctccttgatggtatggataaaagagaacca
gatgatccaagtccttatctcttagctatatggacaccaggtgaaacagcgaattcggca
caaccgcctgaacagaagtgtggagggaaagcgtctggcaaaatgtgctttgacgagact
tgttctgagtgtaacagtctgagggaagcaaactcacagacagttcgaggaactcttctg
ataccttgtcggactgccatgagaggaagttttccgctcaacgggacatatttccaagtc
aacgagttatttgcagaccacgagtccagtctcaaacccatcgatgttcctagagattgg
atatgggatctcccaagaaggactgtttacttcggaacatcagtaacatcaatattcaga
ggtctttcaacggagcagatacagttctgcttttggaaaggattcgtatgtgtccgtgga
ttcgaacagaagacaagagcaccgcgtccattaatggcaaggttgcattttcctgcgagc
aaattgaagaacaacaaaacctaa

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (3)   
   Pfam (3)   
All databases (53)   

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