KEGG T00041: AT5G57160

Arabidopsis thaliana (thale cress): AT5G57160

Entry

AT5G57160 CDS T00041

Gene name

ATLIG4

Definition

DNA ligase 4

Orthology

K10777

DNA ligase 4 [EC:6.5.1.1]

Organism

ath Arabidopsis thaliana (thale cress)

Pathway

ath03450

Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:ath03450]

SSDB

Motif

Pfam:

DNA_ligase_A_N DNA_ligase_A_M DNA_ligase_A_C BRCT PTCB-BRCT mRNA_cap_enzyme

Other DBs

NCBI-GI:

NCBI-GeneID:

MIPS:

TAIR:

UniProt:

Position

AA seq 1219 aa
MTEEIKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFVAVRLIIPSLDRERGS
YGLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGM
ASGGLTIKELNDLLDRLASSENRAEKTLVLSTLIQKTNAQEMKWVIRIILKDLKLGMSEK
SIFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRIGDVNAAW
KKLHGKDVVAECKFDGDRIQIHKNGTDIHYFSRNFLDHSEYAHAMSDLIVQNILVDKCIL
DGEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHKQLCYVAFDVLYVGDTSVIHQSLKER
HELLKKVVKPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVHAAADVERFFKETVENRDEGI
VLKDLESKWEPGDRSGKWMKLKPEYIRAGADLDVLIIGGYYGSGRRGGEVAQFLVALADR
AEANVYPRRFMSFCRVGTGLSDDELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERP
DVWIDSPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELV
NSSNGTTQKQKESESTQDNPKVNKSSKRGEKKNVSLVPSQFIQTDVSDIKGKTSIFSNMI
FYFVNVPRSHSLETFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIHFS
WVLDCCSRNKMLPLLPKYFLHLTDASRTKLQDDIDEFSDSYYWDLDLEGLKQVLSNAKQS
EDSKSIDYYKKKLCPEKRWSCLLSCCVYFYPYSQTLSTEEEALLGIMAKRLMLEVLMAGG
KVSNNLAHASHLVVLAMAEEPLDFTLVSKSFSEMEKRLLLKKRLHVVSSHWLEESLQREE
KLCEDVYTLRPKYMEESDTEESDKSEHDTTEVASQGSAQTKEPASSKIAITSSRGRSNTR
AVKRGRSSTNSLQRVQRRRGKQPSKISGDETEESDASEEKVSTRLSDIAEETDSFGEAQR
NSSRGKCAKRGKSRVGQTQRVQRSRRGKKAAKIGGDESDENDELDGNNNVSADAEEGNAA
GRSVENEETREPDIAKYTESQQRDNTVAVEEALQDSRNAKTEMDMKEKLQIHEDPLQAML
MKMFPIPSQKTTETSNRTTGEYRKANVSGECESSEKRKLDAETDNTSVNAGAESDVVPPL
VKKKKVSYRDVAGELLKDW

NT seq 3660 nt +upstreamnt +downstreamnt
atgacggaggagatcaaattcagcgtactggtatctctctttaactggattcaaaaaagc
aaaacctcatctcagaaacgatccaaattccgcaagtttctcgacacttactgcaaaccc
tccgactacttcgtcgccgtccgtttaatcattccgtcgcttgatcgagaacgaggtagc
tacggccttaaagagtcagtgctcgccacgtgtctgatcgacgcacttggtatctcgcgt
gatgctcctgatgctgttcgtcttctcaattggcgtaaaggaggaactgctaaagctgga
gccaatgctggaaacttctccttaattgctgctgaggtattgcaacgtagacaaggaatg
gcttctggcggtttgactattaaggaattgaatgatttgcttgatcgtttggcttcaagt
gagaacagagcggagaaaactttggttctttctacattgattcagaagacaaatgctcag
gagatgaagtgggtcattaggattattctaaaagatttgaaactgggaatgagtgagaag
agcatttttcaggagttccatccagatgctgaggacttgtttaatgtcacatgtgatttg
aaactagtctgtgaaaagttgagggatcgacaccaacggcacaagcgccaggatatagag
gttggaaaagccgtacgaccccagttagctatgcgtattggtgacgtaaatgctgcttgg
aagaagctgcatgggaaagatgtagttgctgaatgcaaatttgatggggatcgcatacaa
atacacaaaaatgggactgacatacattacttctctaggaacttccttgaccattctgaa
tacgcacatgccatgtcggatcttattgtacaaaatatattggtggacaagtgtatcctt
gatggtgaaatgttggtctgggatacatctctgaatcggtttgctgagtttggttcgaat
caggaaatagccaaggcagcaagggagggtcttgacagccataaacagttgtgttatgtt
gcctttgatgttctttatgttggcgatactagcgtcatccaccagagtttgaaggaacgg
catgaactgctgaagaaagtggtcaaacctttaaaaggtcggctcgaagttttagtacct
gaaggtggtctcaatgttcaccgcccttcaggggaacctagttggtctattgttgttcat
gctgctgctgatgttgagcgatttttcaaagaaacagttgaaaacagagatgaaggaatt
gtgcttaaagacctggaatcaaaatgggaacctggagatcgtagtggcaagtggatgaaa
ttgaagcctgaatatatccgggctggtgctgacctggatgttcttataataggaggatac
tatggctccggacgtcgtggaggagaggtagcacagtttcttgtagccttggctgaccgg
gcagaggcaaatgtatatcccaggcgatttatgtccttttgtagagttggcactgggctt
tctgatgatgagcttaacactgttgtaagcaaactgaagccttatttcagaaaaaatgag
cacccaaagaaggctccaccaagcttctatcaggtcactaatcactccaaagagagaccg
gatgtttggattgacagcccggaaaaatcaataatactttcaatcactagtgatatcagg
acgataaggtctgaggtgtttgttgcaccttacagtctgaggtttcctcgtattgataaa
gtaagatatgacaagccttggcatgaatgtcttgatgtgcaggcttttgtggaattggtg
aattcgagtaacggcaccacacagaaacagaaggagtctgaaagcacacaggacaatccg
aaagtcaataaatcctccaagagaggagagaaaaagaatgtctctcttgttccctctcag
tttattcaaactgatgtatcggatatcaagggcaagacctcaatcttctcaaatatgata
ttttattttgttaacgtgcctcggtcccattctcttgagacattccacaaaatggtggtt
gaaaacggagggaagttttcaatgaacttaaacaactcagtgactcattgcattgcagca
gaaagcagtggaataaagtatcaggcagcaaagcgtcagcgagatgtcatccacttttca
tgggtcttagattgttgttcacgaaataagatgcttcctttgctgccaaagtacttcctc
cacctcactgatgcttcaaggacaaaattacaggatgatattgatgaattttctgattct
tattactgggatttagaccttgaaggtctcaaacaggtcttaagcaatgccaagcaatct
gaagattcaaaatctattgactactacaagaaaaagttatgtcctgaaaaaagatggtcc
tgcctcttaagctgctgtgtttacttttacccgtatagtcaaacattgagcactgaagag
gaagccctattgggaattatggctaagagattaatgcttgaagtcttaatggctggtggt
aaagttagcaataatcttgctcatgcgtcgcaccttgtagttcttgctatggcagaagaa
cctttggattttactttagtttcgaaaagtttcagcgaaatggagaaacgtcttttgctg
aagaaaaggcttcatgttgttagctcgcactggttagaggaaagcttgcaaagagaggaa
aaactgtgcgaggatgtctacactctgaggcctaagtatatggaagagtctgatactgaa
gaatcagataaatccgaacatgatacaacggaagtagcttcccaaggtagtgctcaaacc
aaagagccagcttcctctaaaattgcaattacgagttcaagaggacggtcaaatactcga
gctgttaaaaggggaaggtcttctacaaactcactgcaacgagtacagagacgcagaggc
aagcagccgtctaagataagcggagatgaaacagaggaaagtgatgcttctgaagaaaag
gtttcaacaagactcagtgatatagcagaagagacggattcgtttggtgaggctcaaaga
aactctagcagaggaaaatgtgcgaagagaggaaagtctcgtgtgggacaaacccaaaga
gtacagagatcacgcagaggcaagaaagctgcgaagataggaggagatgagtctgatgaa
aatgatgaattagatggcaataacaatgtgtcagcagatgcggaagagggtaatgcagct
ggtagatctgtggaaaacgaagaaacccgagagcctgacatagcgaagtacacagaatca
cagcaaagagacaacacagtagcagttgaagaggccttacaagattctagaaatgcaaag
acggagatggatatgaaagagaagttacaaatccatgaggatccactacaagctatgtta
atgaaaatgttccctattcccagtcaaaaaaccacagagacatcaaaccgaaccactggg
gaatatagaaaggctaatgtttctggtgaatgtgagtcttcagagaaaagaaaactcgac
gctgagactgataatacatctgtgaacgcaggcgcagaatcagacgtagttcctcctcta
gtgaagaaaaagaaagtcagctaccgggatgttgccggagaactgctcaaagactggtga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   UniGene (2)   
   MIPS-ATH (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (24)   

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