KEGG   Acetobacter tropicalis: CIW82_09240
Entry
CIW82_09240       CDS       T05181                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ato  Acetobacter tropicalis
Pathway
ato03030  DNA replication
ato03410  Base excision repair
ato03420  Nucleotide excision repair
ato03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ato00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CIW82_09240
   03410 Base excision repair
    CIW82_09240
   03420 Nucleotide excision repair
    CIW82_09240
   03430 Mismatch repair
    CIW82_09240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ato03032]
    CIW82_09240
   03400 DNA repair and recombination proteins [BR:ato03400]
    CIW82_09240
Enzymes [BR:ato01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CIW82_09240
DNA replication proteins [BR:ato03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CIW82_09240
DNA repair and recombination proteins [BR:ato03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CIW82_09240
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CIW82_09240
   MMR (mismatch excision repair)
    DNA ligase
     CIW82_09240
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CIW82_09240
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD PTCB-BRCT Transposase_20
Other DBs
NCBI-ProteinID: ATJ90847
UniProt: A0A291PHJ0
Position
complement(1975278..1977365)
AA seq 695 aa
MTEHLAPTELDAAQAKAELTRLADLIGRYNTAYYTHDAPEVSDAEYDALRKRYDAIVALH
PESEPAESAAQTVGAAPDNAFGKHRHLVPMLSLDNVFDQTEFESFISRATRFLGLSEADA
QKLAFVAEPKIDGLSISLTYENGRFVRGTTRGDGTEGEDVTANLLTLKDLPQQLEGHAPE
LIEIRGEVFLSKEHFLALNAAQEAIGRKPFANPRNAAAGSLRQLDPRVTARRPLSLFAYA
MGFSSEKQARSHWAYLEQLRAWGFPVNPLSRRLEAASGAEAFFEEIGRARAALSYDIDGV
VYKIDDLTLQERLGFAGRAPRWAVAWKFPAEQAITTLRAIEIQVGRTGALTPVAHLDPVN
VGGVLVMRATLHNEDEIARKDVRPGDTVQIQRAGDVIPQILAVVPPDPDAPPRAEPFHFP
DHCPACGALAVRPEGEAVRRCTGGLTCPAQIVERLIHFVSRNAFDIEGLGERSIREFYEE
GLIHTPADIFRLHTHAENIMKRDGWGEQSVRNLMQAIEARRTIAFSRFIFALGIRRIGES
NARLLARHYGTYENWVAQLRKAAIIGSDERLELGSITGIGSVIADDLVAFMSEEHNLATL
EDLRSFLNITEEVQTSGGPLAGKTVVFTGTLHTLTRQEARAMAERMGAKVSDSVSKKTDL
VILGEKAGSKAKKAAELGIDTLDEAGWNDFCASQG
NT seq 2088 nt   +upstreamnt  +downstreamnt
atgactgaacacctcgccccgactgaactggacgccgcacaggccaaagctgaactcacc
cgccttgcagacctgataggccgttacaataccgcctattatacgcatgatgcgcccgaa
gtgagcgacgccgaatatgacgccctgcgcaaacgctacgatgccattgtggcgcttcac
ccggagtctgaaccggcagagagtgcggcccagaccgtaggggccgcgccggacaatgct
tttggcaagcaccggcatctggtgcccatgctctctctggacaacgtgtttgatcagaca
gaatttgaatccttcatcagccgtgccacccgctttctggggctgagcgaggcagatgcc
cagaagctggcctttgtggccgaacccaagattgacgggctctccatcagcctgacctat
gaaaacggacgctttgtacgtggcacaacccgaggcgatggcacggaaggcgaggatgtg
accgccaacctgctcacgctgaaggatctgcctcagcagcttgaggggcacgcgccggaa
ctgattgaaattcgtggggaagtcttcctctccaaagagcattttctggcgctgaacgcg
gcgcaggaagccattggccgcaaacccttcgctaacccacgcaacgcagccgcgggttcc
ttgcggcagcttgaccctcgcgttaccgcccgccgccctctttccctatttgcctatgcc
atgggcttcagttcagaaaagcaggcccgcagccattgggcgtatctggagcagttgcgg
gcatggggatttccggtcaatccgctctcccgcaggctggaagcggccagtggtgccgaa
gctttttttgaagagattggccgtgcccgtgccgcgctgagctacgatattgatggcgtt
gtttacaagatagatgatctgacattgcaggaacgtctgggctttgccggacgcgcgccc
cgctgggcggtggcgtggaagttcccggcagagcaggccattaccaccctgcgggccatt
gaaattcaggtaggccgcaccggcgccctgacccctgttgcgcatctggaccccgtcaat
gtggggggcgtactggtcatgcgtgccacgctgcataatgaagatgaaattgcccgcaag
gatgtgcgccccggcgatacggtgcagattcaacgcgcgggtgatgtcattccacaaatt
ctggcggtggtgccaccggacccggatgcaccgccccgtgctgaaccgttccacttccct
gaccattgccctgcctgtggcgcgctggccgtgcggccggaaggggaagccgtgcgccgc
tgcacagggggcctgacctgccctgcgcagattgtggagcgacttatccattttgtctcc
cgcaatgcctttgacattgaagggctgggcgagcgcagtatccgcgagttttatgaggaa
gggctgatccacacccctgcggatattttccgcctgcacacccatgcggaaaacatcatg
aagcgggatggctggggcgaacagtctgtgcgtaacctgatgcaggccatagaagcgcgc
cgcaccattgcgttctcccgctttatcttcgcgctgggaatccgccgcattggcgagagc
aacgcccgcctgctggcgcgccattacggcacgtatgaaaactgggtggcacagttgcgt
aaggccgccatcattggttcagacgaacggcttgaactgggctccattaccggcattggc
agcgtgatcgcggatgatctggtggccttcatgagcgaggagcacaaccttgcaacattg
gaagacctgagatcgttcctgaacataacagaggaagtacaaacctccggcgggccgctg
gcaggcaagaccgtcgtgtttaccggcaccctgcacaccctcacccggcaggaagcccgc
gccatggcggagcggatgggggcaaaagtgtctgattccgtctccaaaaaaacggacctt
gtcattctgggggaaaaagcgggctccaaagccaaaaaagcggcggaactcggcattgat
acgctggacgaagccggatggaacgatttttgcgcaagtcagggctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (27)   

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