KEGG   Amborella trichopoda: 18421514
Entry
18421514          CDS       T02990                                 
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
  KO
K12580  CCR4-NOT transcription complex subunit 3
Organism
atr  Amborella trichopoda
Pathway
atr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    18421514
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atr03019]
    18421514
Messenger RNA biogenesis [BR:atr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     18421514
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     18421514
SSDB
Motif
Pfam: Not3 NOT2_3_5_C DUF5965 BAR_4
Other DBs
NCBI-GeneID: 18421514
NCBI-ProteinID: XP_006826323
UniProt: W1NEI1
Position
Unknown
AA seq 900 aa
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPKEKAKAETREWLNTAVGDLEGQIDCYEAEVEGLSVKKGKTRPPRLTHLEESITRHKA
HIMKLELILRLLDNDELSPEQVNDVRDFVEDYVERNQEDFDEFSDVDELYNSLPLDKVEA
LEDLVAIGPPSLVKGVGSSTAGSGILSMKSSVTASPTQLSQGSTVRDHTEETASQDSNSD
TLPRTPPSSKSGILSSSNPSAPSGISSGLATGVNTTTSSAGVLAHGLGGVTLTSSVLPSP
GPARSILESGASAPLSPITQANSTKEDDSPNLPGRRPSPALSDVGLARGTGRGIPSSQPS
ASVPLSLSSGGGALGTVPAISELAKRSNAGTDERIGSGVQQLVSPLTNRVLLQQPIPKSN
DSSGSTDTSSVVEGATLSGRVFNPSVVSGVQWRPHSASSLQNQTEAGQVRRPEFAPDQRE
KYLYRLQQVQQQGHGTLLGGPHLPGGNHKQFITQQQSPLLQQLNSQSSSVSGQAGLGIGV
QSQGFSTVTSGLQLQLSTVQQGSAQNAMVSSGILKDSDVSGKLEDQQSQQKPSDDSNVDP
TTSLAFTRNLNNEEELKSSYTLDTPVSGPSSLAESQMPRDTDLSPGQPLPSSQSSVGLGV
IGRRSISDLGAIGDNLSGSSAALGAVHDHLYNLQMLEAACYNKLPQPSDSERTNKYVPKH
PAATPSSYPQTQAPIIENPAFWGRVDSDTLFFAFYNQQNTYQQYLAARELKRQSWRYHKK
YNTWFQRHEEPKITTHDFEQGTYVYFDFHITNDEFPQGWCQRIKTEFTFEYTYLEDELVA
NT seq 2703 nt   +upstreamnt  +downstreamnt
atgggagcaagccgcaaactccagggggagatcgatagggtgttgaagaaggttcaggaa
ggcgttgatgtcttcgatagcatttggaacaaggtatatgacactgagaatgcaaatcag
aaggagaaatttgaagcagatttgaagaaggagattaagaaactccaaaggtacagggac
cagatcaagacatggattcagtccagcgaaatcaaggacaagaaagttagtgcgtcttat
gagcaggctctaatggatgcccgcaagctcatagagcgtgaaatggagcgatttaaagtt
tgcgaaaaggaaactaagacaaaggccttctcaaaagaagggctaggccaacaaccgaaa
actgacccgaaagaaaaggccaaagcagagacaagggaatggttaaacactgcggtggga
gatttggagggtcagatcgactgctatgaagctgaagttgagggcctatctgtaaagaaa
ggaaaaacaagacctcctcggctgacgcatttggaggaatctattacccggcataaggct
catatcatgaagctagaattgattttgagacttttggataatgatgaattgagtcctgaa
caagtaaatgatgttagggatttcgtggaggattacgttgagcgcaatcaggaggacttt
gatgaatttagtgatgtcgatgagctgtacaactcattaccattggacaaagtggaagca
cttgaagatctagttgccattggtccccctagcctcgttaagggtgttggttcttccaca
gcaggcagtgggattttaagcatgaagagttctgttacagcttcacctactcagctatct
caaggaagcaccgttagggaccacactgaagaaacagcttcccaagatagtaattctgat
accctacctaggacgcctccttcttccaaaagtggcatcctgagttcttcaaatccctcg
gctccttcaggaatcagttctggtttggcaacgggggttaatacaactacttccagtgct
ggtgttcttgcccatggcttaggtggggtaaccctcacttcatcagtgcttccaagtcca
ggacctgcacgcagtatcttggaatctggtgcttcagctccattgtcacctataactcag
gccaattctactaaagaggatgatagtccgaaccttccaggaagaagaccatctccagct
cttagtgatgttgggttagcaagaggtactggaaggggtattccctcaagtcaaccatca
gctagtgttcccttgagcttgagttcaggtggtggagcccttggcacagttcctgcaatc
tctgaattggcaaagagaagtaatgcaggaacagatgaaagaattggaagtggagttcag
cagctagtttctcctctgaccaatagagttctattgcaacaaccgatccctaagtccaat
gacagctctggttcaactgacaccagcagtgttgtggagggtgctaccttaagtgggaga
gttttcaatccttcagttgtttcaggagtgcagtggagacctcacagtgcgagttcatta
caaaatcagaccgaggcgggacaggttagaagacctgaattcgcacctgatcagagggag
aaatatctttaccgcctccagcaagtacaacagcaaggtcacggtacccttcttggagga
cctcatcttcctggtggaaatcataaacagttcattacccaacaacaaagcccccttttg
cagcagttgaattctcaaagctcatctgtatcaggacaagccggactaggtattggtgtt
caatcccagggcttctctactgtgacttctggtttacaactgcagctgagtactgtgcaa
cagggatctgctcaaaatgccatggtttcaagtggaatattgaaagattctgatgtctct
gggaaattagaagatcaacaatcccagcagaagccatcagatgattcaaatgtggatcct
actacaagcttagcattcaccaggaacctgaacaatgaggaggaattaaagagttcatac
acattagatacccctgtttcaggtcctagctcactggctgaaagtcaaatgcccagagat
acagatttatctccagggcaacctttaccatcatcccaatcgtcagttggccttggtgtt
attggtcgaagaagcatttcagatcttggtgccatcggtgataatcttagtggatcaagt
gcagctttgggagcagtgcatgatcatctatataatctacaaatgcttgaagcagcttgt
tacaacaagctcccacaaccaagtgactcagagcgcacaaacaaatatgtccctaagcat
cctgctgcaaccccttcaagctaccctcaaactcaggctcccatcattgagaaccctgcc
ttttgggggagagtggactctgatacattgttctttgcattttataaccaacagaacact
tatcagcagtacttggctgcaagagagttgaaaaggcagtcatggagataccacaagaaa
tacaatacttggtttcagcggcatgaggagccaaaaataacaacacatgattttgaacag
ggaacatatgtctactttgatttccacataacaaatgatgagttcccgcaagggtggtgc
caaagaatcaaaactgagttcacatttgagtacacctaccttgaagatgagcttgtcgca
tag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (4)   
   Pfam (4)   
All databases (40)   

Download RDF
DBGET integrated database retrieval system