KEGG   Amborella trichopoda: 18447478
Entry
18447478          CDS       T02990                                 
Name
(RefSeq) probable RNA polymerase II transcription factor B subunit 1-3 isoform X2
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
atr  Amborella trichopoda
Pathway
atr03022  Basal transcription factors
atr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    18447478
  09124 Replication and repair
   03420 Nucleotide excision repair
    18447478
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:atr03021]
    18447478
   03400 DNA repair and recombination proteins [BR:atr03400]
    18447478
Transcription machinery [BR:atr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     18447478
DNA repair and recombination proteins [BR:atr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     18447478
SSDB
Motif
Pfam: BSD PH_TFIIH SAB
Other DBs
NCBI-GeneID: 18447478
NCBI-ProteinID: XP_011628233
Position
Unknown
AA seq 606 aa
MEPPVVTMRAKYKASGPKDPGVAGVLTMRDDSFIFRPNDPSSSVKLDVSFRCIKGHKFSK
EGSKQALLNLTQDKGGGYMFEFANFKDRDVCRDLVGRVLGRLQCLPPSDQSAQVVPAQPT
TQHDNQLSMAEMEQRMNLLREDSELQKLHRQLVIGGVLTETEFWATRKNLLDDAAHKASK
QRAGFKSAMLADVRPLTDGRTNKVTFSLTPEIIHQIFAEKPAVHQAFLKFVPSKMSERDF
WTKYCRAEYLHRTKNSVAAAAEAAEDEELAVFLKHDDILASEARRKIRRVDPTVDMAADL
GDDYSHLPGHGILRDGSKESVDSESELPKRTLLQDLNRHAAVVLEGRTLDVELGDTRTVA
EALARSKQAEVATETSDETENQKRLERVSQMTEIEDLQAPRSLPYAPLCIKDPREYFDSQ
RANAFKATGDTGSGVNKDCCHLSTKQAYESLRAQILEVKSVGFKDPIVIPDLALKVLNDV
NQQLSSTDPQLGKNPQATVLDMLPHRTKEELLQHWTSIQELLRHFWSSYPLTTTFLHAKV
NRVKDAMAQIYRKLPEVKESVQSEFRHQVSLLVKPMLQVLDEAFKHYDAEMQKRSTKTSE
GRNGIL
NT seq 1821 nt   +upstreamnt  +downstreamnt
atggagccaccagttgtgaccatgcgtgctaagtataaggcctctgggcccaaggatcct
ggagttgcaggggtgttaactatgagagatgatagcttcatattcagaccaaatgaccca
agttcatctgtcaagcttgatgttagtttcagatgcattaaaggtcataagttcagtaaa
gagggttcaaagcaagcacttttgaatctaacacaagataagggtggaggatacatgttt
gagtttgcaaactttaaagacagggatgtttgccgggatcttgtcggaagggtccttggg
aggctccagtgcctgccaccatctgatcagagtgcccaagttgtacctgcacaacctact
actcaacatgataatcaactcagtatggcagagatggagcagagaatgaatcttctgcgt
gaggatagtgaattgcagaaacttcataggcaattagtcatcggtggtgtgctgacagaa
accgagttttgggcgacaagaaagaatcttcttgacgatgcagctcacaaagcatcaaag
caacgagctggatttaaaagtgcaatgcttgcagatgttagaccattgactgatggtcgg
acaaataaagttaccttcagtttgactccagagattattcatcagatttttgctgagaag
ccagcagttcaccaggcctttctaaaatttgtgccaagcaagatgagtgaaagggatttc
tggaccaagtattgtcgagcagagtatctccataggaccaagaattctgtggcagcagca
gcagaggcagctgaagatgaagaactggctgtatttttgaagcatgatgatatattggcc
agcgaagctcgccgtaagatccgacgagtagatccgactgtagatatggctgctgaccta
ggagatgattattcgcatttgccgggtcatggaattcttcgtgatggtagcaaggagagt
gttgattctgagtcagaattgccaaagagaacgctcttacaagatcttaatcgccacgca
gcagttgtcctggaagggaggacattagatgtggagttgggagacacaaggactgtagca
gaagcacttgcaaggtccaaacaggctgaagtggcaactgaaacttctgatgagactgaa
aaccagaaaagactggaaagagtttctcaaatgaccgaaatcgaagatctacaggcacca
cgaagcttaccatatgcacccctatgtatcaaggatccacgggagtactttgattctcag
cgagcaaatgcatttaaagccacaggagatacaggttctggagtaaataaagattgttgt
catctgagcactaaacaagcatatgagtctctgagggcacaaatcttagaggtgaaatca
gtaggatttaaagacccgattgttatacccgacttggcccttaaggttctgaatgatgtg
aatcagcaactttcaagtacagatcctcagcttggaaagaatcctcaggctacagttctt
gacatgctacctcacagaactaaagaggaactcttacagcactggacttctattcaagaa
ctgctgaggcatttttggtcgtcttacccacttactacaacatttttgcatgccaaggtt
aatagagtgaaggatgctatggcacaaatctaccgcaagctcccggaggtaaaggaatct
gtgcagtcagagttccgacatcaagtgtcactgctagtgaaacctatgcttcaggttcta
gatgaggcatttaagcactatgatgcagagatgcagaagagatctacaaagacgagtgag
ggacgaaatggaattctttag

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