KEGG   Amborella trichopoda: 18447780
Entry
18447780          CDS       T02990                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV subunit 1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
atr  Amborella trichopoda
Pathway
atr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    18447780
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:atr03021]
    18447780
Enzymes [BR:atr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     18447780
Transcription machinery [BR:atr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     18447780
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 Clathrin_bdg
Other DBs
NCBI-GeneID: 18447780
NCBI-ProteinID: XP_020531334
Position
Unknown
AA seq 1431 aa
METDELMEMMVPMGHLNAIKFEFMTREDIEKFSVLSISNTSGVTDPQLGLPTPDRKCSTC
GASDNLNCDGHFGDIELPATIYNPYLVHALVQILNNICPGCKSIRQKKGKKLKMLDKGDC
KYCAKKGFNEKQWYPSLKFKVVTRDFSGKKCLSIMMEVDPRLPAKFHGKALNELLPDDYW
EFIPNGLNFLESSGKRILSPYQAYTLLESLDPGAFSKYAPRRQSLFLNSVPVTPNHHRVM
ESKNLFTDGPHIMPDNRTMALKKLISASNQLLFMGNLVTTRGNLVLDYFKESKFGGKKLW
KAVANGGSSSSKWFKDTVLGKRTNYAFRMTVVGDPKIKLGEIGFPRDISENLMIPQHVNL
FNLKMLTSCAYSILQQKTVFYVRRKGDLVPVKHPYDLEVGDVIYRNLRDGDLLMINRPPS
VHQHSLIAFTVRVLNMKSVISINPLCCSPFFGDFDGDCLHGFVPQSIDNRVELQELMTLH
HQLLNGQDGLPLVSLSHDSLTAAYLVTRNDEFLDQFQMQQLQMFCPSELPIPAICKSPLS
RGPLWTGHQFFSMFLPKSLDYQYVSNGVLISEGELLTTSGESRWLQNSNEGIFFAIVKHV
PLKALSYLHSAQEALCEWMMMRGFTVSFLDISLASNLYSREKMVDEIRCAVQEAKRLARV
MQLTTEYLKKSXSGMDYPEDYYSNRIPTGFNEQSGRAFRDVYFDILRLIPEYGSKNNSLL
AMTSAGSKGSIQKLVEQSMCLGLQISRNSLSFGTHELNQGHVSCTIVETSFLDGLNPFEC
LVHASSSRGNCFSDSADVPGTLTRKLMFFLRDLCLAYDGTVRSAYGNQVIQFSYGNSDGK
VDVNCDKPQDLSPESAWCDAPVGGLPVGSLAGCAISEAAYSALDHPLGLSGTSPLLDLKL
LVNHYSPYHLKIINIPFENEWLGRLQRQVIMVFNSQRDVGEARTCSELDARSPIDWAVQG
ALFRNGTVKAGYKCLASNSEDNYNMGSNISPWVCQIHVCKEKMRARGLSIGLLVDALVRN
YDSCTRGVRHFVLPKLHIFHGYGVFSFDGDDNPGTISIGVAMEVLADFPNPLNIMRDLII
PLLLRTVIKGFEEIKKVMIFWKDHPRTSSLKRGHSGELFLKVAMSEKCKPGRLWSILQKR
CDAIAKLIDWQRSHPDSLQNICNAFGIDSAWKYYFENVHSVLSGMGKKVHREHLLIAANC
LSVTGEFHGLTLKGIKKHRSQMSITTPFMQACFASPSESFLQAAKTGAEDRLHGPLDALA
WGKKACIGTHGSFDILFNDNDQKAAPCELGDGTLSCDPYEVILGAEIGELGYRDAGIGSV
GSNDPSDQTNSNTKMFKPWYDIMEMRKSLRSILRKYKMGEFLNEEDEPIVMKALDFHPRK
DKKLGTGVHRIKVGHNPSYPQSECFVVVWEDGSEVDFSYRKCVPGGMGRWI
NT seq 4296 nt   +upstreamnt  +downstreamnt
atggaaactgatgaacttatggaaatgatggtgccgatggggcacctgaatgctattaag
tttgagtttatgaccagagaagatatagaaaagttttcagttttatcgataagtaacacc
agtggtgtaactgatcctcagttagggcttcctacccctgaccgcaaatgttccacatgt
ggtgcatctgataatctcaattgtgatggtcactttggggacattgaattgccagccacc
atatataatccatatcttgttcatgcacttgtgcaaattttgaataatatttgtccaggg
tgcaaatcaattcgacagaaaaaggggaagaaattgaaaatgttggataaaggagattgc
aagtattgtgctaaaaagggcttcaatgaaaaacagtggtatccctcactgaagtttaag
gttgtgacaagggatttctctggaaagaaatgtttgtctattatgatggaagtggaccca
cggctgccagccaagtttcatggaaaggctttgaacgagttgctacctgatgattactgg
gagttcatcccaaatggactgaattttttggagtcatctggaaagaggatcctttcacct
taccaggcatatactttattggaatctctggatccaggggccttttctaaatatgctcca
aggaggcaatctttgtttctgaattcagttccagttactccaaatcatcaccgagtgatg
gagtctaagaacctctttactgatggaccccacataatgcctgacaaccgcacaatggct
ttgaaaaaactaatcagtgcttccaatcaactgttatttatgggtaacctggttaccact
cgcggaaatttggttctcgattattttaaggagtcaaagtttggcggtaagaagctttgg
aaagcagtggctaatggtggttcgtctagttcaaaatggtttaaagatactgttcttggt
aaaagaacaaattatgcatttcgaatgactgttgttggtgatccaaaaattaaattgggt
gaaattgggttcccacgtgatatttcagaaaatttgatgatcccacagcatgtaaatttg
tttaacttgaagatgttgacctcttgtgcatattccattctccaacaaaagactgttttt
tatgtaagacgaaaaggtgatcttgtgcctgttaaacatccatatgatctggaggttggt
gatgtgatatataggaatttaagagatggggatcttttgatgattaatcgacctccatca
gttcatcagcactccttgattgctttcactgttagggtacttaacatgaaatctgtcatt
tcaattaatcccctctgttgctctcctttctttggtgatttcgatggagactgtcttcat
ggatttgttcctcaatccattgacaatagagtagaactacaagagcttatgactttacat
caccaactattgaatgggcaagatggtctgccactggtttcactgagtcatgatagtctc
actgctgcatatttggtcacaagaaatgacgagttccttgatcaatttcaaatgcagcag
ttacaaatgttttgtccatctgagttacctattccagcaatttgtaaatcacctttatcg
cgtggtcctctttggactggacatcaattctttagcatgtttcttcctaaatctcttgat
tatcaatatgtttccaatggggttctaatttctgagggtgaattgcttaccacttctgga
gaatcacgttggctacaaaattcaaacgagggcattttctttgccattgtaaaacatgtt
cctcttaaagctctcagctatctacattctgcacaggaagctctctgtgagtggatgatg
atgagaggttttactgtgtcttttttggatatctctctcgcatctaatttgtattctcga
gaaaaaatggttgatgagattagatgtgcggtgcaagaagccaagcgcttggctcgtgtc
atgcaattgactacagaatatcttaaaaagagtnaatcaggtatggattatcctgaagat
tattattcgaacaggatcccgactggttttaacgagcaatctggacgtgcatttagggat
gtttactttgatattctaaggctaatccctgaatatggcagtaagaacaattcgttgttg
gcaatgacatcagctggaagcaaggggtccatacaaaaacttgttgagcaatctatgtgc
cttggcttacaaatatcaaggaactcgttatctttcggcacacatgagctcaatcagggc
catgtttcttgtacaatagttgagacctcattcttagatggactgaacccattcgagtgt
ctagtgcatgcttcatctagtcggggaaattgtttcagtgacagtgctgatgttcccggg
actttgactcgtaagcttatgtttttcttgcgagatttatgtcttgcatatgatggaact
gtgagaagtgcttatgggaatcaagttatacagttctcttatggtaactcagatggaaaa
gtggatgttaattgtgataaaccccaagacctatctcctgagagtgcatggtgtgatgcc
cctgttggtggtctacctgttgggtctttggctggttgtgctatctcagaagctgcatat
agtgcattggatcaccctcttggactatcaggaacatctccactcttagatctaaagctg
ctggttaatcactattctccatatcatcttaaaataatcaatattccctttgaaaacgag
tggttgggaaggctacagagacaggttataatggtcttcaatagtcaaagagatgttgga
gaggccaggacttgttctgaattggatgcaagaagtcctatcgattgggcagtgcaagga
gcattgttccgtaatggaactgtaaaagctggatacaaatgcctggcttcaaactctgag
gataattacaacatgggatcaaatatcagtccttgggtttgtcagattcatgtctgcaag
gaaaaaatgagggctagaggattgtcgatagggctacttgtagatgctcttgttcgtaat
tatgactcctgcactagaggggttagacattttgtccttcccaagttgcacatatttcat
gggtatggtgttttctcctttgatggggatgataaccctggaacaatttctattggggtg
gcaatggaagttcttgcagattttccaaacccactgaatataatgcgagacttgattatt
ccgctccttctacggactgttattaaagggttcgaggagataaaaaaagtgatgattttc
tggaaagatcaccctaggacatcgagtttgaaaagaggtcattctggtgaactctttttg
aaggttgccatgtcagagaaatgtaagccagggagactctggagtattctgcaaaaaaga
tgcgatgctatagctaagctgattgactggcaacgtagtcaccctgatagcttgcagaat
atctgtaatgcttttgggattgattctgcatggaagtactattttgagaatgtgcactct
gttctgtctggtatggggaagaaggtgcacagagagcatctacttattgccgctaattgt
ctatcagtaactggagagttccatggtttaactttgaaaggcataaaaaagcatcggagt
caaatgtcaattacaacaccatttatgcaagcctgttttgctagcccaagtgaatctttc
ctccaagctgcaaaaactggtgcagaagatagacttcatggacctctagatgctttggcc
tggggaaagaaagcttgcattgggacacatgggagttttgacatactatttaatgataat
gatcagaaagctgctccatgtgagttgggagatggaaccttgtcatgtgatccttatgag
gtgatccttggagcggagataggtgaactaggatatcgagatgctggtatcggatcagta
ggatccaatgatccaagcgaccaaacaaattcaaataccaaaatgttcaagccctggtat
gatatcatggaaatgcgtaaatcactacgttccattttgcgcaaatacaaaatgggtgaa
tttttgaatgaagaggacgaacccattgtgatgaaggccttagatttccatcctagaaag
gataaaaaattgggcactggtgttcacagaattaaggttgggcataacccctcatatcct
caatcagaatgttttgtggtggtatgggaagatggatctgaagttgacttctcatatcgg
aagtgtgttcctggtggtatgggaagatggatctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (48)   
   KEGG ORTHOLOGY (1)   
   RefGene (44)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (63)   

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