KEGG T00070: Atu5055

Agrobacterium tumefaciens C58: Atu5055

Entry

Atu5055 CDS T00070

Gene name

ligD

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

atu Agrobacterium tumefaciens C58

Pathway

atu03410	Base excision repair
atu03420	Nucleotide excision repair
atu03430	Mismatch repair
atu03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:atu03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:atu03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:atu03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:atu03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M

Other DBs

NCBI-GI:

159186474

NCBI-GeneID:

1136828

UniProt:

Q7D410

Position

AT:complement(52456..55110)

AA seq 884 aa
MASDKLSTYKQKRDFQKTQEPSGAAKLKASNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNKTPE
QALAKGDFKFTLEGERLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDFSVEEKGAAVLDEN
DTSVASGRTMEAIAAGKGRKPKPFMVQSGDVQADAVWDSNHGLAAEERASDTKAKRKPAL
KKPAKSTMPEFIPPQLCETLDRPPSAKGWIHEIKFDGYRIQTRIENGEVTLKTRKGLDWT
AKYPAIATSAANLPDAIIDGEICALDENGAPDFAALQAALSEGKTDELVYFAFDLLFEEN
EDLRQLPLTERKERLQTLLDDAGEDPRLRFVEHFETGGDAVLKSACKLSLEGIVSKQADA
PYQSGRTETWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVFKGDHFVYVGRVGTGYGAKT
VDTILPRLRELETSKSPFTGIGAPKKDPNVVWVKPELVAEIQFAGWTADGLVRQAAFKGL
REDKPAHEVEAEKPASPAKTDTPTPAKSKPSRPARGKNAKAEVMGVMISSPDKALWPDAN
DGEPVTKEDLARYHEAVGPWLIDHIKGRPCSIIRTPDGIGGEVFFQRHAMPGTSNLIELV
KVFGDKKPYLQIDRVEGLAAIAQIGGVELHPWNCEPGQPEVPGRLVFDLDPGPDVPFSTV
VEAAREMRDRLEELGLVSFCKTTGGKGLHVVTPLAVPKGKKLSWPEAKGFAHDVCMQMAR
ETPELYLIKMAKNQRNGRIFLDYLRNDRMATAVAPLSPRARAGAPVSMPLSWKQVKTDLD
PKRFTIRTVPALLSKTTAWQDYCDGQRSLEQAIKRLAKSMKQAA

NT seq 2655 nt +upstreamnt +downstreamnt
atggccagcgacaagctctcgacctacaagcagaaacgcgattttcaaaaaacgcaggag
cctagcggcgcagcgaagctgaaggcgtcgaaccggaggcgctttgttatccagaagcac
gatgcgacccgactgcattacgacctgcgcctcgaactcgacggcgtgttcaaatcctgg
gctgtaaccaaggggccctctctcgatccgcacgacaagcgcctggctgtcgaggtcgaa
gaccatccgttggactatggcgacttcgaaggcacgatccccaaggggcagtatggcggc
ggcacggtcatgctgtgggatcgcgggtactgggagccggaaggcaacaagacgcccgaa
caggcgctcgccaaaggggatttcaagttcacgctggagggagagcggctgcatggcagc
ttcgttctggtgcggatgcgcaatgaccgcgacgggggtaagcggacgaattggctgctg
atcaaacatcgcgacgacttctctgttgaagaaaagggcgccgctgtcctcgacgaaaac
gacacgtcggtggcctcgggccgaactatggaggcgatcgccgctggcaagggcaggaag
ccaaaaccgttcatggtgcagagcggcgacgtccaggcggatgccgtttgggacagcaat
catggactagcggcggaggaacgtgcctcggacacgaaagcaaagcgaaagccagcattg
aaaaaaccagcgaagtcgacaatgccggagttcataccgccgcagctttgcgaaacgctc
gatcgcccgccttcagccaagggctggatccacgagatcaagttcgacggctaccgcatc
cagacccgcatcgaaaacggtgaggtgacgcttaaaacccgcaagggcctggactggacg
gccaagtatccggcgattgcgacatcggccgcaaacttacctgatgccattatcgacggg
gagatttgcgcgctcgatgaaaacggtgcgccggacttcgcagcacttcaggccgcactg
tcggaaggcaagaccgacgaactggtctatttcgccttcgatctgctgttcgaggagaac
gaggatctacgacaactgccgttgaccgaacgcaaggaacgcctgcagacactgcttgat
gatgccggcgaggacccacgcctgcgtttcgtcgaacatttcgaaaccggtggcgacgcc
gtcctgaagtcggcctgcaagctctcgctggaaggcattgtttcgaagcaggcggatgca
ccctatcaatccggccgcaccgagacctgggccaaatccaaatgccgcgccggccacgaa
gtggtcatcggcgcctatgccaagaccaacggcaagttccgctcgctgctggtgggagtc
ttcaagggtgatcacttcgtctatgtcggccgcgtcggaactggctacggggccaaaacg
gtcgacacgatcttgccgaggctccgggaactggaaacctcaaagtcgccctttaccggg
attggcgccccaaagaaggatcccaacgtggtctgggtcaaacccgaactggtcgcggag
atccagttcgccggctggactgcggatggcctcgtccgccaggcggcgttcaagggattg
cgcgaggacaagcctgcacacgaagtcgaggcagaaaagccggcatcgccggcaaagact
gataccccgacgccggccaagtcaaagccatcaaggccggcacgcggcaaaaacgccaag
gccgaggtgatgggcgtgatgatttccagcccggacaaagcgctctggcccgatgccaat
gacggagagccggtgaccaaggaagatcttgcgcgctatcatgaggccgtcggtccatgg
ctgatcgaccatatcaagggacggccatgctcaatcatccggacgcccgacggcatcggt
ggagaggtgttcttccagagacacgcgatgccgggaacgtcgaacctgatcgagctggtc
aaggtgttcggcgacaagaaaccctatctgcagattgatcgcgttgagggccttgccgcc
attgcccagatcggcggcgtcgaactgcacccgtggaattgcgagccgggtcaaccggag
gtgccgggccgtcttgtcttcgaccttgatccgggtccggacgtccccttctcaaccgtg
gtggaagccgctcgggagatgcgcgaccggctggaggaacttggcctcgtcagcttctgc
aaaaccaccggaggcaagggccttcacgtcgtaacgccgcttgcggtaccgaagggaaag
aagctgagctggccggaggcgaaaggcttcgcacacgatgtctgcatgcagatggcacgc
gagaccccggagctttatttgatcaagatggccaagaaccagcgcaacggtcggatcttc
ctcgactacctgcgcaatgaccgaatggcgactgctgttgcgccgctgtcaccgcgcgcg
cgggcaggcgcaccagtatcgatgccactgagctggaagcaggtaaaaacggatctcgat
ccgaaacgcttcaccattcgcaccgtaccggcgctgttgtcgaagacgaccgcctggcag
gattactgcgacgggcagcgttcgctggagcaggccatcaaacgattggcgaagtcgatg
aaacaggctgcctaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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