KEGG   Pseudazoarcus pumilus: C0099_11910
Entry
C0099_11910       CDS       T05265                                 
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
atw  Pseudazoarcus pumilus
Brite
KEGG Orthology (KO) [BR:atw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:atw03009]
    C0099_11910
Enzymes [BR:atw01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     C0099_11910
Ribosome biogenesis [BR:atw03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    C0099_11910
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 Methyltransf_25 MTS Methyltransf_11 Methyltransf_15 Met_10 Methyltransf_23 PrmA Cons_hypoth95 Methyltransf_12
Other DBs
NCBI-ProteinID: AUN95572
UniProt: A0A2I6S8K2
Position
complement(2430313..2431620)
AA seq 435 aa
MPVAVIESVDHEGRGVTHVDGKATFIDGALPGEEVEYSVYRKRPSYELAQLVRVITASAQ
RVQPKCRYFGVCGGCSMQHLDSGAQAAVKQRVLEDALWHVGKLRADTIFPAIHGPSWGYR
FRARIGARFVPKKGGALVGFRERKSSYVADMTSCEILPPHVSAMLPALRELIGGLSTPDR
IPQIELAVGDDDLTVLVFRHLEPLTAADEDRFRTFADAHGVQVWLQSKGPDTVRRLHPEE
APGLSYTLPEFGVKMDFRPTDFTQVNVAINQLLMRRAMQLLAPRAGERVADLFCGLGNFS
LPIARLGATVVGVEGSETLVARALENARANGLEANAEFHAANLFEATEDSLAALGHLDKM
LIDPPRDGAIAVVKALSERQLPARIVYVSCNPATLARDAAVLVHEKGYTLRGAGIANMFP
QTSHVESIALFERAA
NT seq 1308 nt   +upstreamnt  +downstreamnt
atgccagtcgcagtaatcgaatcggtcgatcacgagggccgcggcgtcacccacgtcgac
ggcaaggccaccttcatcgacggcgccctgccgggcgaggaggttgaatactcggtctat
cgcaagcgtcccagctacgagctggcgcaactggtgcgcgtgatcaccgcgagcgcgcag
cgagtgcagcccaagtgtcggtacttcggcgtgtgcggcggctgttcgatgcagcatctg
gattccggtgcccaggccgcggtcaagcagcgcgtgctcgaggatgcgctgtggcacgtc
ggcaagctgcgcgcggacaccatcttcccggcgattcacggacccagctgggggtatcgc
tttcgcgcgcgcatcggtgcgcgcttcgtgcccaagaagggcggcgcgctggtcggcttc
cgtgagcgcaagagcagctacgtcgccgacatgacgagttgcgagatcctgccgccgcac
gtctctgcgatgctccccgcgctgcgtgaactgatcggtggcctgtccacgcccgaccgc
attccgcagatcgaactggccgttggcgacgacgatctcacggtactcgtgttccgccac
ctcgagccgcttaccgctgccgacgaagaccgcttccgtacctttgcggacgcgcacggt
gtgcaggtgtggctgcagtccaaggggccggacaccgtgcgccgcctgcaccccgaagaa
gccccgggcctgtcctacaccttgcccgaattcggcgtgaagatggactttcgcccgacc
gacttcacccaggtcaacgtcgcgatcaaccagctgctgatgcgccgcgcgatgcagctg
ctggccccgcgcgcgggcgagcgcgtcgccgacctgttctgcggcctgggcaacttcagc
ctgcccatcgcccgtctcggcgcgaccgtggtcggcgtcgagggcagcgagacgctggtc
gcgcgcgcgctcgagaacgcccgcgccaacggcctcgaagccaacgcggagtttcacgcc
gccaacctgttcgaagccaccgaagacagcctcgccgcgctggggcacctcgacaagatg
ctcatcgacccgccgcgcgacggcgccatcgccgtggtcaaggccttgtccgagcgccag
ttgcccgcgcgcatcgtctacgtctcgtgcaaccccgccacgctcgcccgcgacgccgcc
gttctggtgcacgaaaagggctacaccctgcgcggcgccggcatcgccaacatgttcccg
cagacctcccacgtcgaatccatcgccctgttcgagcgcgcggcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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