KEGG T00277: Ava

Anabaena variabilis: Ava_4209

Entry

Ava_4209 CDS T00277

Definition

DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)

Orthology

K03046

DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]

Organism

ava Anabaena variabilis

Pathway

ava00230	Purine metabolism
ava00240	Pyrimidine metabolism
ava01100	Metabolic pathways
ava03020	RNA polymerase

Module

ava_M00183

RNA polymerase, bacteria

Class

Metabolism; Nucleotide metabolism; Purine metabolism [PATH:ava00230]
Metabolism; Nucleotide metabolism; Pyrimidine metabolism [PATH:ava00240]
Genetic Information Processing; Transcription; RNA polymerase [PATH:ava03020]

SSDB

Motif

Pfam:

RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_3 Biotin_lipoyl_2

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

CyanoBase:

CYORF:

UniProt:

Position

5275281..5279348

AA seq 1355 aa
MTNEKMIFRNRVVDKGQLRNLISWAFTHYGTARTAVMADKLKDLGFRYATRAGVSISVDD
LMVPPSKRSLLEAAEEEIRATEVRYQRGEITEVERFQKVIDTWNGTSEALKDEVVTHFKQ
TNPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYIIS
SYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIREIDCGTTRGIPVRPMTEGSKTLIKL
STRLLGRVVGEDVIHPKTKEVIAARNTPISDDLAKEIEKAGVAEVVVRSPLTCEAARSVC
QHCYGWSLAHAKMVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVAQQVRSKMDG
TIKLPRKLRTRTHRTRHGEDALFVESNGIMILEPRKEGSETPAPQEIHVTQGSTIYIVDG
QQVKQGQLLAEVALGGRTTRTNTEKAVKDVASDLAGEVKFAEVVPEQKTDRQGNTTTTAA
RGGLIWILSGEVYNLPPGAELVVKNGDRVETNGVLAETKLTTIHGGVVRLPEATPGKSTR
EIEIITASVVLDQATVTVQSSQGRNNYLITTGNNQVFNLRATPGTKVQNGQVVAELIDDR
YRTTTGGFLKFAGVEVQKKGKAKLGYEVVQGGTLLWIPEETHEVNKDISLLLVEDGQFVE
AGTEVVKDIFCQNSGVVEVTQKNDILREVVVKPGELLMVDDPEAVIGRDNTLLQPGEELL
GQVATELRYIQYVESPEGPALLSRPVVEFAVPSNPDVPSTTSVSQQTGRSIQMRAVQRLP
YKDSERVKSVEGVELLRTQLVLEIEQEGEQEHNASPLAADIELIPDPEDADVQRLQLVIL
ESLVLRRDIAADATQGSTQTSLEVKDGDTIVPGSVVARTQILSKEGGIVRGVQKGSEAVR
RCLVLRHSDMTTLNTSAKPKVKAGDLIVAGTELAPGVFAEESGQIVAVKNAGESTTTQDA
ALSTQNYAVTIRAGRPYRVSPGAVLQIEDGDLVQRGDNLVLLVFERAKTGDIIQGLPRIE
ELLEARKPKEACILAKRGGEVKVVYGDGDEAIAIKVIESNGVVTDYPLGPGQNLAMPDGS
VVPAGQPLSDGPSNPHEILEVFFSLGSEDGVYACASHALQKVQTFLVNEVQMVYQSQGID
IADKHIEVIVRQMTNKVRIDDGGDTTMLPGELVELRQVEQVNEAMAITGGARAQYTPVLL
GITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGYNTYD
EPGMLEDYSTLETTSVLDETDDPLDMVLDDRTARAYNLDSPGLAETGFSNRRSILDDDEL
IADEIHDLVEAEVEVDDEVDDDYEDDDEDDDDYED

NT seq 4068 nt +upstreamnt +downstreamnt
atgactaacgaaaagatgatttttcgcaatcgcgtcgttgacaaaggtcaactgagaaat
ttgatttcttgggcgtttacccattatggaacggcgcgtaccgcagtaatggcggataaa
ttaaaggatttaggctttcgctatgctaccagagccggggtttccattagtgttgatgac
ttgatggtaccacctagcaagcggagtcttttggaagcggctgaagaggaaattcgcgcg
actgaagtccgttaccaacggggagaaattacggaagtagaacgtttccaaaaggtaata
gatacctggaacggtactagcgaagccctcaaggatgaggtggttactcacttcaaacaa
accaacccccttaactccgtgtacatgatggcgttctccggcgcacggggtaatatctcc
caggtgcgtcagctggtgggaatgcggggactgatggcagatccccaaggggaaattatt
gacttacccatcaaaaccaacttccgcgaaggtctgacggttacagaatacattatttcg
tcttacggtgcgagaaaagggttagtagatacagcgttacgcaccgccgactctggttat
ctgacccgtcgtctagtagacgtatcccaggatgtgatcattcgggaaattgattgcggt
acgaccagagggattcccgtccgaccgatgaccgaaggtagcaaaaccctaattaagcta
tctacacgcttgctaggacgggtggtgggagaagatgtgatccatcccaaaacaaaagaa
gtgattgcggcacgcaatacccccatttctgatgacttagccaaagaaatagaaaaagct
ggggtagcagaagttgtggtgcgatcgcctcttacctgtgaagctgcccgttctgtctgc
cagcactgctacggttggagtttggctcacgccaaaatggtagatttaggtgaagctgtc
gggattattgcggctcaaagtatcggggaacccggaacccagctcaccatgagaacattc
cacactggtggtgtgtttactggggaagtagcccaacaagtccgttccaaaatggatgga
actatcaagctaccccgaaaactgcggacaagaacccatcgtacccgccacggggaagat
gccttgtttgtagaaagcaacgggatcatgattctggaaccacgcaaggaaggttccgaa
accccagcacctcaagaaattcatgtgacccaaggttccacaatctatattgttgatgga
caacaggtcaaacaaggtcaactactagcagaagttgcccttggtggacgtaccacccgg
actaatacagaaaaagccgtaaaagatgtggcttctgacttagccggagaagtgaagttt
gccgaagttgttcccgaacaaaaaaccgaccgtcaaggtaacactactaccacagccgct
agaggtggtttgatttggattctctctggagaagtgtataatttgccaccaggtgcagaa
ttggtagtgaaaaatggcgatcgcgttgaaactaacggtgtacttgcagaaactaagtta
acaactatacatggtggtgtagtacgtctaccagaagctactccaggtaagagtaccaga
gaaattgaaatcattaccgcttctgtagtcttagatcaagcaacagtcaccgtccagagt
tcccaaggtcgcaacaactacttaattaccacgggtaacaaccaagtctttaacctacgg
gcaaccccaggcacaaaagtgcagaatggtcaagtcgtcgctgagttaattgatgaccgt
tatcggacaaccactggtggattcctgaaattcgcgggcgtagaagtccagaagaaaggt
aaagccaagcttggttatgaagtggtacagggcggtacactgttgtggattcccgaagaa
acccacgaagttaacaaagacatctccttgctgttggtagaagacggacagtttgtcgaa
gctggtacagaagttgttaaagatatcttctgccaaaacagtggtgtggtagaagtcacc
cagaaaaatgacatccttcgggaagttgtggtgaagccaggggaattgctcatggtagat
gatccagaagcagtcattgggcgagataataccctgttacaacctggtgaagaactgttg
gggcaagttgccacagaactgcgttacatccagtatgtggaatcgccggaaggcccagcg
ttgttgagccgtccagtggtagaattcgctgtacccagtaacccagatgtgccatctact
acatctgtcagccaacaaacaggacgttcgattcaaatgcgggcagtacaaagattgcct
tacaaagattcagaacgcgtcaagtcggtggaaggtgtggaactgctgcgtacccaacta
gtattggaaattgagcaggaaggcgaacaagaacacaatgcttctcctctagccgcagat
attgagttaatccctgaccctgaggatgcagatgttcagcgcttgcagctggtaattttg
gaatccttagtgttgcgtcgtgacattgccgccgatgccacccaaggcagtacccaaact
agcctagaagtgaaagatggagacaccattgttcccggttccgtagttgcacgtacccaa
atcttgtctaaagaaggggggattgtcagaggtgtgcagaagggaagcgaagcagtgcgt
cgttgtttagtgttgcgtcatagtgacatgacaacattaaataccagtgccaagcccaaa
gtcaaagccggtgatttaatcgtcgcaggtaccgaacttgcccctggtgtctttgccgaa
gaatctgggcaaattgtagcggtgaaaaatgcgggtgaaagcaccaccactcaagacgca
gcacttagcactcagaactacgccgtgactatccgtgctggtcgcccttatcgagtcagc
cctggtgcagtattgcagatagaagatggcgacttggtacaacggggtgataacttagtg
ctgctagtctttgaacgggcaaaaactggagacatcattcaaggtttgcctcggattgaa
gaactactagaagcccggaaacccaaagaagcttgtatcttagcaaaacgtggtggggaa
gttaaggtagtatacggtgatggtgatgaagcgatcgctatcaaggtcatagaatctaac
ggggtagtcactgattatcctcttggccccggacaaaacttagccatgcccgatggttcc
gttgtaccagccggacaaccattgagtgatggtccttccaacccccacgaaatcttagaa
gtattcttcagtctgggttcggaagacggggtttatgcttgcgctagccacgccttacaa
aaagtgcaaacattcctagtgaatgaagtgcagatggtgtatcaatcccaaggtattgac
atcgccgacaaacacattgaagtgattgtgcgccagatgaccaacaaagtgcggattgat
gacggtggtgataccactatgcttcccggtgagttggtagaattgcgccaagtcgagcag
gtgaatgaagcaatggcaattactggcggtgcgagagcgcaatacacaccagtattgtta
ggtatcactaaagcatcgttgaataccgacagtttcatttctgccgcatccttccaagaa
acaacacgggttctgacagaagcagccattgagggtaaatccgactggttgcgtggtttg
aaagaaaacgtgattattgggcgattgattccggcgggaactggttacaatacctatgat
gaacctgggatgctcgaagattattccaccctggaaaccacaagtgtcttggatgaaacc
gatgatcctctagatatggtattagatgaccgtacagctcgcgcctacaatttagattct
ccgggtcttgcggaaaccggattcagtaaccgtcgctcaattctcgatgatgatgagttg
attgctgatgaaatccatgacctcgtagaggcggaagtagaagtagacgatgaagtagat
gatgattacgaggatgatgacgaagacgatgacgattacgaagactaa

All links

Pathway (5)   
   KEGG PATHWAY (4)   
   KEGG MODULE (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (5)   
   KEGG ENZYME (1)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   CYANOBASE-AVA (1)   
   CYORF-AVA (1)   
   JGI-AVA (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (30)   

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