KEGG   Achromobacter xylosoxidans NBRC 15126 = ATCC 27061: AX27061_1407
Entry
AX27061_1407      CDS       T02964                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
axn  Achromobacter xylosoxidans NBRC 15126 = ATCC 27061
Pathway
axn03030  DNA replication
axn03410  Base excision repair
axn03420  Nucleotide excision repair
axn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:axn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AX27061_1407
   03410 Base excision repair
    AX27061_1407
   03420 Nucleotide excision repair
    AX27061_1407
   03430 Mismatch repair
    AX27061_1407
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:axn03032]
    AX27061_1407
   03400 DNA repair and recombination proteins [BR:axn03400]
    AX27061_1407
Enzymes [BR:axn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AX27061_1407
DNA replication proteins [BR:axn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AX27061_1407
DNA repair and recombination proteins [BR:axn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AX27061_1407
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AX27061_1407
   MMR (mismatch excision repair)
    DNA ligase
     AX27061_1407
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AX27061_1407
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 zf-NADH-PPase
Other DBs
NCBI-ProteinID: AHC45872
Position
1540843..1542942
AA seq 699 aa
MSKAGGTPAAETAARLRAEIEQHNVRYYVYDDPSISDAEYDRLMRELQDLEAAHPELVTP
ESPTQRVGAAPVSAFGSVRHAVPMLSLGNAFDEEDVVAFDRRVTDTLRGAGLLGPAQQAE
YFCELKLDGLAISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLSGPAPKVLEV
RGEVLMNRADFEKLNAAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEV
RGLPGTQSGLFDEASAGAADASTLPEKSHGAMLDWLASLGLPVNVKHNHRATGAEGLMAF
YAKVGALRPELPYDIDGVVYKVDSLPAQKLLGFVARAPRFALAHKFPAEEATTTLLDIEV
QVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVVG
AVLEKRPADAREFVMPKACPVCGSAIERLEDETIARCTGGLFCAAQRKQTLWHAASRKAL
DIEGLGEKLVEQLVDSGRVKSLADLFSLRPLELVGLDRMGQKSADNLVEAIDKARAPALG
RLLFALGIRHVGETTARDVARHFGSIEAIMDADEDALSSVPDVGPVVAGSIRRFFAEQHN
RDVIGQLKAQGVHAVAEAVPQDTTLAGKTFVLTGTLPNWTREEASMRIQAAGGKVSGSVS
KKTAYLVAGEDAGSKLTKAQELGVTVLDEDGLKELLGSS
NT seq 2100 nt   +upstreamnt  +downstreamnt
atgagcaaggccggagggacccccgcggcggaaaccgcggcgcgcctgcgcgcggaaatc
gagcagcacaacgtccgctattacgtctacgacgacccgtcgatctcggatgccgaatac
gaccgcttgatgcgcgagctgcaggacctggaagccgcgcatcccgaactggtcacgccc
gaatcgcccacgcagcgggtcggcgcggcgccggtctcggccttcggcagcgtgcgccac
gcggtgccgatgctgtcgctgggcaacgccttcgacgaagaagacgtcgtggcgttcgac
cgccgcgtcaccgatacgctgcgcggcgccggcctgctgggcccggcgcagcaggccgaa
tacttctgtgaactcaagctcgatggcctggcgatcagcctgcgctacgaggacggccgg
ctggtgcaggccgccacccgtggcgacggccagacgggcgaggacgtcacctccaatatc
cgcacgatcaaggcgatcccgctgcagctgagcggcccggcgcccaaggtgctggaggtg
cgcggcgaagtgctgatgaaccgcgccgatttcgagaaactcaacgcggcccaggccaag
cgcgacgagaaggtcttcgtcaacccgcgcaacgccgccgccggcagcctgcgccagctc
gacccgcgcatcaccgccaagcggccgctgcgctttttcgcctacggctggggcgaggtg
cggggcctgccgggcacgcagagcggcctgttcgacgaagcgtcggccggcgcggcggat
gcctcgaccctgcccgagaaatcgcatggcgccatgctcgactggctggcgtcgctgggc
ctgccggtcaatgtgaagcacaaccaccgcgccaccggcgccgagggcctgatggcgttc
tacgccaaggtcggcgccctgcggcccgagctgccctacgacatcgacggcgtggtctac
aaggtggattcgctgccggcgcagaaactgctgggcttcgtggcgcgcgcgccgcgcttt
gcgctggcgcacaaattcccggccgaggaagccaccaccacgctgctggacatcgaagtg
caggtcggccgtaccggcgccatcaccccggtcgcccggctcaagccggtgttcgtgggc
ggcgtgaccgtcaccaacgccacgctgcacaacgaagacgagatccgccgcaaggacgtg
cgcatcggtgacaccgtcatcgtgcgtcgcgccggcgacgtgattccggaggtggtgggc
gcggtgctcgagaagcgtcccgccgacgcgcgcgagttcgtcatgcccaaggcctgcccg
gtctgtggctcggcgatcgagcgcctggaagacgaaaccatcgcccgctgcaccggcggg
ctgttctgcgccgcgcagcgcaaacagacgctgtggcacgcggccagccgcaaggcgctc
gatatcgagggcctgggcgagaagctggtggagcaattggtggacagcggccgcgtcaaa
tcgctggccgacctgttcagcctgcgcccgctcgaactggtcgggctggaccgcatgggc
cagaagtcggccgacaacctggtcgaggccatcgacaaggcgcgcgcgccggcgttggga
cgcctgctgttcgcgctgggcatccgccacgtgggcgagaccacggcgcgcgacgtggcc
cggcactttggcagcatcgaggccatcatggacgccgacgaggacgcgctgtcctccgtg
ccggacgtggggccggtggtggcggggtcgatccgccgcttcttcgccgaacagcacaat
cgcgacgtgatcgggcagctcaaggcccagggcgtgcatgcggtggccgaggccgtgccg
caggacaccacgctggcgggcaagaccttcgtgctgactggcacgctgcccaactggacg
cgcgaggaagcctccatgcgcatccaggccgcgggcggcaaggtcagcggctcggtgtcc
aagaagaccgcctatctcgtggccggcgaagacgccggcagcaagctcaccaaggcccag
gaactgggcgtcacggtgctggacgaggacgggctcaaggaattgctgggttcctcttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

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