KEGG T01341: AXYL

Achromobacter xylosoxidans: AXYL_00438

Entry

AXYL_00438 CDS T01341

Gene name

ligD1

Definition

DNA ligase D 1 (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

axy Achromobacter xylosoxidans

Pathway

axy03410	Base excision repair
axy03420	Nucleotide excision repair
axy03430	Mismatch repair
axy03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:axy03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:axy03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:axy03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:axy03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S

Other DBs

NCBI-GI:

311103658

NCBI-GeneID:

9894770

UniProt:

E3HUH3

Position

462917..465445

AA seq 842 aa
MADSLKKYREKRNFAVTPEPPEGGESGDAGLVFVIQKHWASHLHYDFRLELDGAMKSWAV
PKGPSFDPSVKRMAVQVEDHPIAYNQFEGTIPKGQYGAGKVIIWDEGRWTPIGDPRKGYK
AGHLKFTLEGVKLRGRWALIRMKGKESDRQPPWLLIKESDEYAREDQDFSVVDEMPDSVV
PLRAKKKAEAARSKPQARAAKAVEAVAALPGKAAVLPASLKPQLATLVDGVPRGADDWSY
EMKFDGYRILARLEDGSVKLYTRNGHDWTARMPRLAQELAALEIANAWIDGEIVVLTREG
VPSFQALQNAFDAAGTADIVFYAFDLPYVAGRDLRDEPLSLRRDLLRQVIARCKGKHVKF
SEAFDKPPADLVASACKLGLEGIIGKRLSAPYVSRRTDDWIKLKCTQRQEFVIVGYTEPK
GSRKGFGALLLAVHEPDGALRYAGNVGTGFDDRTLLDLHRKLASIEQKTSALTQGKPRAL
KQVHWVQPTLIGEVSFGEWTGDGHVRHSTFRGLRTDKPPKKITREVAMPAEKLSPRNSTA
KAKAGGAAKPSKGMKLSNPDRVIDPSSGATKLDLARYYGLVAPLMMEHLRGRPVSFVRAP
AGIQGEHFFQRHSESPIPGVTALPERLYPGHPSLMEISNVAAILAAAQLNVVEFHTWNAL
KTSIGKPDRMLFDLDPGEGVDWPTVQQGAELVRVLLQELGLRGWLKTSGGKGLHVVVPIR
KQYGWDAVKDFSEAMVRHLAQTLPKLFVAKSGPKNRVGKIFADYLRNGFGATTVAAWSAR
ARPGLGVSVPVRWDELDGLKGSAQWTIANIHTRLDAGNEPWDDYAPQAIGRAMKQLGVEL
RS

NT seq 2529 nt +upstreamnt +downstreamnt
atggcggacagtctcaagaaataccgcgagaagcgcaatttcgccgtcacgcccgaaccg
cccgagggcggcgagtccggcgacgcaggcctggtgttcgtgattcagaagcactgggcc
agccatctgcactatgacttccgcctggagctggacggtgcgatgaagagttgggcggtg
ccgaaagggccgtcattcgatccctccgtcaagcgcatggccgtgcaggtcgaagaccat
cccatcgcctacaaccagttcgaaggcaccatccccaaggggcagtatggggccggcaag
gtgatcatctgggacgaggggcgctggactccaataggcgatccccggaagggctacaag
gcgggccatctgaaattcacgctcgagggcgtgaaactgcgcgggcgctgggcgctgatc
cgcatgaagggcaaagaaagtgatcgacagccgccctggttgttgatcaaggagagcgac
gaatacgcgcgggaggaccaggacttcagcgtcgtggatgagatgccggacagcgtggtg
ccgctgagggcgaagaagaaggcggaggctgcgcgcagcaagccgcaagctcgcgctgcc
aaggcggttgaagctgtcgcggccttgcccggcaaggccgctgtgctgcccgcgtcgctc
aaacctcaactggccaccctggttgacggtgtgccgcggggcgcggacgactggtcctat
gaaatgaagttcgacggctaccggatcctggccaggctggaggacggaagcgtgaagctg
tacacgcgcaacggccacgactggacggccaggatgccgcgcctggcccaggaactggcg
gcattggagattgccaatgcctggatcgacggagagatcgtggtgctgacgcgcgaaggc
gtgcccagctttcaggccttgcagaacgccttcgatgccgcgggtaccgcggatatcgtg
ttctacgcctttgacctgccctatgtggcggggcgcgatctgcgcgacgagccgctcagc
ttgcgccgggatctgctgcggcaggtgattgccaggtgcaagggcaagcatgtgaagttc
agcgaggcctttgacaagccgccagcggacctggtcgcctcggcctgcaagctgggcctg
gaaggaatcatcggcaagcgcctgtccgcgccctatgtgtcgcgccgcacggacgactgg
atcaagctcaagtgcacccagcggcaggagttcgtcatcgtgggctataccgaacccaag
ggcagccgcaagggctttggcgcgctgctgctggcggtgcatgagcctgatggagccctg
cgctacgccggcaacgtaggcactggtttcgacgacaggactttgctcgacctgcaccgc
aaactggccagcatcgagcagaaaaccagcgccctgacccaaggcaagccgcgcgccctc
aagcaggtccattgggtccagcccaccttgatcggagaggtctctttcggggagtggacc
ggcgacggccatgtacgccattcgactttccgggggttgcgtaccgacaaaccaccgaag
aagatcactcgcgaggtcgccatgccagccgaaaagctctccccgcgcaacagcactgcc
aaggccaaggcagggggcgcagcaaaaccctcgaaaggaatgaagctatcgaatcccgac
cgcgtgatagatccatcctccggggcgaccaagctagacctggcccgctactacgggctt
gtggcgcccctgatgatggagcacctgcgcggccggccggtctcctttgtccgggcgccc
gcggggatccagggcgagcatttcttccagcggcattcggaatcccctatcccgggggtg
accgcgctgcccgaacgtctctatccggggcacccctccctgatggaaatttcgaacgta
gcggcgatactcgcggctgcccagctgaacgtggtggagttccacacctggaacgcgctc
aagacctcgatcggcaagccggatcggatgctgttcgacctggaccccggggaaggggtg
gattggcccacggtccagcagggcgcggagttggtgcgcgtgctgctgcaggaacttggc
ctgcgcggctggctgaagaccagcggcggcaagggcctgcatgtggtcgttcccatccgc
aagcaatacggctgggatgccgtgaaggacttttccgaagccatggtgcgccatctggcg
caaaccctgccaaagctgttcgtcgccaaaagcggccccaagaatcgcgtgggcaagata
ttcgccgattatctgcgcaacggcttcggcgctacgacggtggcggcctggtcggcgcgc
gcccggcccggcctgggcgtgtccgttcccgtacgctgggatgaactggacgggctgaaa
gggtcggcgcaatggaccatcgccaatatccacacccgcctggacgcgggcaacgagcct
tgggacgactacgcgccgcaggcgatcggccgggccatgaagcagctcggggtcgagctg
cgatcttga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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