KEGG   Ilumatobacter coccineus: YM304_03240Help
Entry
YM304_03240       CDS       T02501                                 

Definition
putative ATP-dependent DNA ligase (EC:6.5.1.1)
Orthology
K01971  
DNA ligase (ATP) [EC:6.5.1.1]
Organism
aym  Ilumatobacter coccineus
Pathway
Base excision repair
Nucleotide excision repair
Mismatch repair
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:aym00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    YM304_03240
   03420 Nucleotide excision repair
    YM304_03240
   03430 Mismatch repair
    YM304_03240
   03450 Non-homologous end-joining
    YM304_03240
Enzymes [BR:aym01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     YM304_03240
DNA repair and recombination proteins [BR:aym03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      YM304_03240
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
UniProt: 
Position
complement(360088..361011)
Genome map
AA seq 307 aa AA seqDB search
MALRFPVSPMKATLGTLPASDDGWAYEIKWDGHRTLAHIDGSSVRLQTTSGKISSERWPE
VLDIAGAVNADTAILDGEMLVIGDDGLPSFDLVQARDASRHPAMFHAFDVLSINGTDTVD
LPYTSRRDLLMQLVEPGDHWAVPAHHLTGGKALLDATAEQGLEGLIAKRVDSVYRPGARS
KDWLKLKNRVRVEVVIGGFTAGTGNRSSTFGALLVGVVEPDATSGADDRLRFAGGVGTGF
THDVLESLRTRLAALETEQCPFDPAPPRPIARTATWVAPELRAIVDIAEFTNDGHVRHAS
FVGLVDD
NT seq 924 nt NT seq  +upstreamnt  +downstreamnt
gtggccctgcgtttcccggtcagccccatgaaggccaccctcgggacgctgccggcctcc
gacgacgggtgggcctacgagatcaagtgggacggacaccggacgctcgcgcacatcgac
ggctcgtcggtgcggctccagaccacgtcgggcaagatcagcagtgagcggtggccggag
gtgctcgacatcgccggcgccgtcaacgccgacacggcgatcctcgacggcgagatgttg
gtgatcggcgacgacggcctcccgagcttcgatctcgtgcaggcgcgcgacgcctcacgc
cacccggcgatgttccacgcgttcgacgtgctctcgatcaacggcaccgacacggtcgac
ctgccgtacacgtcgcgccgcgacctgctgatgcaactcgtggagccaggcgaccactgg
gccgttcccgcgcaccatctgaccggcggcaaggcgctcctcgatgccacggcagaacag
ggcctcgaagggctcatcgcgaaacgggtcgattcggtgtatcggcccggcgcgcggtcg
aaggactggctgaagctgaagaaccgggtgcgggtcgaggtcgtgatcggcggcttcacc
gccggcaccggcaaccgttcgtccacgttcggagcgctcctcgtcggcgtcgtcgaaccc
gacgccacttccggcgcagacgaccgtcttcggttcgctgggggcgtgggcaccggcttc
acccacgacgtgctcgagtcgcttcgcacccggctcgccgccctggagaccgagcagtgc
ccgttcgaccccgcgcctcctcgacccatcgcgcgcaccgcgacctgggtcgctcccgag
ctgcgggcgatcgtcgacatcgccgagttcaccaacgacggacacgtgcgtcacgcgagc
ttcgtcggccttgtcgacgactga

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