KEGG   Ilumatobacter coccineus: YM304_26880Help
Entry
YM304_26880       CDS       T02501                                 

Definition
putative ATP-dependent DNA ligase (EC:6.5.1.1)
Orthology
K01971  
DNA ligase (ATP) [EC:6.5.1.1]
Organism
aym  Ilumatobacter coccineus
Pathway
Base excision repair
Nucleotide excision repair
Mismatch repair
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:aym00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    YM304_26880
   03420 Nucleotide excision repair
    YM304_26880
   03430 Mismatch repair
    YM304_26880
   03450 Non-homologous end-joining
    YM304_26880
Enzymes [BR:aym01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     YM304_26880
DNA repair and recombination proteins [BR:aym03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      YM304_26880
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
UniProt: 
Position
complement(2983984..2985531)
Genome map
AA seq 515 aa AA seqDB search
MLFDELAAASQAVAATTKRNDKVMALADALRRCAPDEIVPAVAFLTGTTPLGRIGVGWST
LADVSATPAADASWTVGDVDRRLRAIESLHGDGVGAARRDALAELLDAATEREQRLLRGI
LSGELRQGALAGVMTTAVAKAADVPVAAVRRASMMAGDLGAAAHAALVGGIEALDAVSLQ
PLRPVQPMLASAGSSVADAFSGADAVQVDWKLDGIRLQAHRRGNDVGLFTRNLNEVTDRL
PGVVEVVRSLPGGDLVLDGEAMGLLDDGSPRRFQDTMGDFGADRPDDARPGEGRGDAIGA
FFFDILHVDGSPVHDEALSTRRELLAATVPDTARLPSIITAEVAEAEAFLGRAIAAGHEG
VMVKDLDQPYEAGRRGKGWRKVKPVHTLDLVVLAVEWGHGRRRGMLSNIHLGARASGESA
NEFVMVGKTFKGMTDEMLRWQTARFSDLKIGEGTGRERHVVYVEPVQVVEIAVDGVQVST
TYPGGVALRFARVKQYRHDKSADTADTIDAVRALL
NT seq 1548 nt NT seq  +upstreamnt  +downstreamnt
gtgctgttcgacgaactggccgcggcctcgcaggccgtcgctgccaccacgaagcggaac
gacaaggtcatggcgctggccgacgcgctccgacggtgcgcgcccgacgagatcgtgccg
gcggtcgcgtttctcaccggcacgacgccgctcggccgcatcggcgtcggctggtcgacg
ctcgccgatgtatcggcgacaccggcggccgacgcgtcgtggacggtcggggacgtcgat
cgccggctccgagcgatcgagtcgctgcacggtgatggcgtcggtgccgcgcgtcgcgat
gcgctggccgaactcctcgacgctgcgaccgagcgagagcagcggctgctccgcggcatt
ctgagtggcgagcttcgccagggggcgctcgccggggtgatgaccacggcggtggccaag
gccgccgacgtgccggtcgccgccgtccgccgtgcgtcgatgatggccggagatctcggc
gcggcggcgcacgccgcgttggtcggtgggatcgaggctctcgacgccgtgtcgttgcag
ccgctgcgtccggtgcagccgatgctcgcgagcgccgggagcagcgtggccgatgcgttc
tccggggccgacgccgtccaggtcgattggaagctcgacgggatccgactgcaggcgcac
cgacgtggaaacgacgtcgggttgttcacgcgcaacctcaacgaggtgaccgatcgcctg
cccggcgtggtcgaggtggtgcggtcgctgccgggcggcgacctggtgctcgacggcgag
gcgatgggcctgttggacgacggttcgccccgacgcttccaggacacgatgggtgacttc
ggagccgatcgccccgacgacgctcggccgggggagggacgcggcgacgcgatcggtgcg
ttcttcttcgacatcttgcacgtcgacggatctcccgtccacgacgaggcgctgtcgacc
cgtcgcgagttgctcgctgccacggtccccgacacggcgcgcctgccgtcgatcatcacc
gctgaagtcgccgaggccgaggcgttcctcggccgcgcgatcgctgctggccacgagggc
gtgatggtgaaagacctcgatcaaccgtacgaagccggtcgacgcgggaagggctggcgc
aaggtcaagcccgtccacacgctcgacctcgtggtgctggccgtcgagtgggggcacggc
cggcgccgagggatgctctcgaacatccatctcggtgcccgtgccagcggcgagtcggcc
aacgagttcgtcatggtcggcaagacgttcaagggcatgaccgacgagatgctgcgttgg
cagaccgcccgattcagcgatctgaagatcggtgaaggcaccggtcgggaacgtcacgtc
gtgtacgtcgagccggtgcaggtcgtcgagatcgcggtcgacggggtgcaggtgtcgacg
acgtatccgggcggtgtcgctctgcgattcgcgcgcgtcaagcagtatcgccacgacaag
tcggccgacaccgccgacaccatcgatgccgtccgagccctgctctga

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