KEGG T03686: DO78

Brucella abortus NCTC 10505: DO78_2423

Entry

DO78_2423         CDS       T03686

Symbol

mfd

Name

(GenBank) transcription-repair coupling factor

K03723

transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]

Organism

babc Brucella abortus NCTC 10505

Pathway

babc03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:babc00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    DO78_2423 (mfd)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:babc03400]
    DO78_2423 (mfd)
Enzymes [BR:babc01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     DO78_2423 (mfd)
DNA repair and recombination proteins [BR:babc03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      DO78_2423 (mfd)

SSDB

Motif

Pfam:

TRCF DEAD Helicase_C UvrB_inter CarD_TRCF_RID ResIII UB2H RecG_dom3_C AAA_22 NitrOD2

Other DBs

NCBI-ProteinID:

AIJ59443

Position

2:complement(355693..359205)

AA seq 1170 aa
MPVFSKLGLKPGAIANKGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQRIAD
LEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCALKKAPHPAVILTT
SNAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTVRDIGEYAVRGGIL
DLYAPGAEEPLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMSEITLSSDMISRFRK
NYVAMFGAPQRDDALYQAISEGRRFAGMEHWLPLFYDNLETVFDHAGPMPVVFDHLVHEA
LTERHTMVVDHYEARLRQAEGKEAGSDAVPYKPVKPEMLYLTPGQVEEAAEAAGLRIDLT
PFGAPEVSGRTIIHADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEG
SLDRLCQVLDEHGLEKIETVDRLSTVKALSRDKVTAAVLAVESGFDAGDLVVVAEQDILG
DRLIRRSRRRKRDQDFISEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYA
GDDRLFLPVENIELLSRYGSEGSDAVLDKLGGGAWQARKAKLKKRLLEIAGHLIQIAAER
QMRGAPVMTPPDGLYAEFAARFPYDETDDQLTAIEAVADDLAQGKPMDRLICGDVGFGKT
EVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPINVAHASRLVGAKGLAAT
KKGLEEGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLS
ATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPLVIRETLLRERYRGGQSFYV
VPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGL
DIPTANTMIVHRADMFGLAQLYQLRGRVGRSKQRAFALFTLPAGKMLTQMAERRLKVLQS
LDTLGAGFQLASHDMDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVATLKGSGEVEDS
QWSPQIAIGTAVMIPEAYVPDLQLRLGLYRRLADLEEPQDIDAFGAELIDRFGPMPDEVQ
HLLKIVYIKALCRRANVEKLDAGPKGVVIQFRHATFNNPVGLVKMIGEQGSMAKIRPDQS
IVFIRDWPTPEKRLNGSAVIMTQLAKIAAA

NT seq 3513 nt +upstreamnt +downstreamnt
atgcccgttttcagcaaactcggtctcaagcccggcgcgatcgcgaataaggggcgccat
atcgtcattgacggtgttgcggacggttttgaggcgttctgccttgcgcgtctggtggaa
gagatcggggagcgcgggccgatcatgtatatcgtgcgcgacgggcagcgcattgccgat
ctggagcaggtgttgggtttcgtttcgcccgatctgccggtgctgcacctgcccgcctgg
gattgcctgccttatgaccgcgtgtcgccaggggcggatgctgcagcgcgcagacttgcg
gcgctcagcgcgctttgcgcactgaagaaagcaccgcatccagccgtcattctcaccacg
tccaatgccgtgctgcaaaaattgccgccgcaggccgcacttggcgaacaggtgatctca
gcgcgccccggcaaccagctcgacatgaacgatcttgccgcacggctggagcgcaacggc
tttgagcgtgtctctaccgtgcgcgacatcggcgaatatgcggtacgcggcggcattctc
gatctttatgcgccgggagcggaagaaccgctgcggcttgattttttcggcgatacgctg
gaaacgatccgtgccttcgatcccgcctcccagcgcaccaccggcacccgaaaggaattc
gtgcttcagccgatgagcgaaatcacgctctcgtccgacatgataagccggtttcgcaag
aattatgtggccatgttcggcgcgccgcagcgtgacgatgcgctttatcaggccatcagc
gaaggccgccgttttgctggcatggaacattggctgccgcttttctatgacaatctggag
acagttttcgaccatgccgggccaatgccggtcgtgttcgaccatctggtgcatgaggcg
ctgaccgagcgccacaccatggttgtggaccattacgaagcgcgactgcggcaggcggag
ggcaaagaggcgggcagcgatgccgtgccttacaagccggtaaagccggaaatgctctat
cttacgccgggccaggttgaagaagccgccgaggccgctggcctgcgtattgaccttacg
ccattcggcgcgccggaggtttccggccggaccattattcatgccgatgtgcacaagggc
cgcagctttgccgaggagcgcgccgcaaccgacgtgaacctgtttgaagccgtggtgaaa
catattgcagacctgcgcgcctccggcaaaaaggttctggttgccgcctggaccgaaggt
tcgctcgaccggctctgtcaggttctggacgaacacgggcttgaaaaaatagagaccgtc
gataggctttccaccgtcaaggccctgtcgcgcgacaaggtgacggcggcggtgctggcg
gtcgaaagcggcttcgatgcgggcgatctggtggtcgtggcggagcaggatattctgggc
gacaggctcatccgccgctccaggcgccgcaagcgcgatcaggatttcatctcggaagtc
gcctcgctgacggctggcgatatcgtcgtccatgtcgatcacggcattgggcgctttatc
ggcctcaagacgattactgcggcaggcgccccgcatgactgccttgaaatccattatgcg
ggcgatgaccgcctgtttctgccggttgagaatatcgagcttctgtcgcgctatggctcg
gaagggtccgatgcggttctcgacaagctgggcggtggcgcatggcaggcgcgcaaggca
aaactcaagaaacggcttctggaaattgccggccatctgatccagattgccgccgaacgc
cagatgcgcggtgcgcctgtgatgacgccgccggacggtctttatgcggaatttgccgcg
cgctttccctatgatgagactgacgaccagttgacggcaatcgaggccgtggcggatgat
cttgcgcaaggcaagccgatggatcgcctcatctgcggcgatgtcgggttcggcaagacg
gaagtggcgctgcgcgccgccttcatcgccgcgatgagcggcgttcaggtggcagtggtc
gtgccgaccacgcttctttcgcgccagcatttcaagaccttctccaaccgctttcacggc
ctgccgatcaatgtggcccacgcctcacgcctcgtcggcgcgaaggggctggccgccacc
aaaaaggggctggaagagggaacggtcgatattgtcgtcggcacacacgcgcttttgggc
agctccatcaagttcaagaatctcggccttctcattatcgatgaggagcagcatttcggt
gtgaagcacaaggaacggctgaaggaactgaaatccgacgtccatgtgctgaccctttcg
gccacgccgatcccgcgcaccctgcaacttgcgctgaccggcgtgcgtgaactttcgctc
atcaccacgccgccggtggaccgcatggcggtgcgcaccttcgtctcgccattcgatccg
ctcgtgatccgcgaaacccttttgcgtgaacgctatcgcggcggccagagcttctatgtc
gtcccacgcatagccgacctcacggatattgaagaattcctgaaggagcatgtgccggaa
ctgaaagtggccgtggcccatggccagatggcgccgggtgtgctggatgacatcatgaat
gccttctatgacgggcagtatgatgtgcttctttccacaaccatcgtggaatcgggcctc
gatattccaaccgccaacaccatgatcgtgcatcgtgccgatatgttcgggctggcgcaa
ctctatcagttgcgcggccgcgtgggccgctccaagcagcgcgctttcgcgctgttcacg
ctcccggcgggcaagatgctgacgcagatggccgaacgccgtctgaaagtgctgcaatcg
ctcgacacgcttggcgcgggcttccagcttgcaagccacgacatggatattcgcggcgca
ggcaatctgctgggcgaggaacagtcgggccacatcaaggaagtgggcttcgagctttac
cagcaaatgcttgaagaagcggttgcgacgctgaagggctccggcgaagtggaagacagc
cagtggtcgccgcagatcgccattggtacggcggtcatgatcccggaagcctatgtgccc
gacctgcaattgcgccttggcctttatcgccgtctggccgatctggaagagccgcaggat
atcgatgcctttggtgcggaactcatcgaccgtttcggcccgatgcccgacgaagtgcag
catcttctcaagatcgtctatatcaaggcgctctgccgccgcgccaatgttgagaaactc
gatgccgggccgaagggcgtggttatccagttccgccacgcgaccttcaacaatccggtc
ggtctggtaaaaatgatcggcgagcaggggtccatggcgaagatcaggccggaccagagc
atcgtcttcatccgcgattggccgacaccggaaaagcgcctcaacggctccgccgtcatc
atgacacagcttgcaaagattgcggcggcctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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