KEGG   Bacillus sp. BS34A: BS34A_00720
Entry
BS34A_00720       CDS       T03833                                 
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
bacl  Bacillus sp. BS34A
Pathway
bacl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bacl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BS34A_00720 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bacl03400]
    BS34A_00720 (mfd)
Enzymes [BR:bacl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BS34A_00720 (mfd)
DNA repair and recombination proteins [BR:bacl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      BS34A_00720 (mfd)
SSDB
Motif
Pfam: UvrB_inter TRCF DEAD Helicase_C CarD_TRCF_RID ResIII MFD_D3 UB2H RecG_dom3_C AAA_14
Other DBs
NCBI-ProteinID: CEJ75602
Position
I:60429..63962
AA seq 1177 aa
MDNIQTFIKESDDFKSIINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNL
YQAQKVTDDLTSLLEDRSVLLYPVNELISSEIAVASPELRAQRLDVINRLTNGEAPIVVA
PVAAIRRMLPPVEVWKSSQMLIQVGHDIEPDQLASRLVEVGYERSDMVSAPGEFSIRGGI
IDIYPLTSENPVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPEEKARAM
EKIDSGLAASLKKLKADKQKEILHANISHDKERLSEGQTDQELVKYLSYFYEKPASLLDY
TPDNTLLILDEVSRIHEMEEQLQKEEAEFITNLLEEGKILHDIRLSFSFQKIVAEQKRPL
LYYSLFLRHVHHTSPQNIVNVSGRQMQSFHGQMNVLAGEMERFKKSNFTVVFLGANKERT
QKLSSVLADYDIEAAMTDSKKALVQGQVYIMEGELQSGFELPLMKLAVITEEELFKNRVK
KKPRKQKLTNAERIKSYSELQIGDYVVHINHGIGKYLGIETLEINGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVETSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQREFESAFPYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIGDGKQVALLVPTTILAQQHYETIKERFQDYPINIGLLSRFRTRKEANETIK
GLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDI
PNVNTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFE
TEIDVELDAYIPETYIQDGKQKIDMYKRFRSVATIEEKNELQDEMIDRFGNYPKEVEYLF
TVAEMKVYARQERVELIKQDKDAVRLTISEEASAEIDGQKLFELGNQYGRQIGLGMEGKK
LKISIQTKGRSADEWLDTVLGMLKGLKDVKKQTISST
NT seq 3534 nt   +upstreamnt  +downstreamnt
atggacaacattcaaacctttataaaagaaagcgatgactttaaatccatcatcaacggt
ttacacgagggcctgaaggaacagctgctcgcgggtctgtcgggttccgcgcgttctgtt
tttacttctgctctggctaatgaaacgaataagcctatctttctcatcacccataactta
tatcaagcccagaaagtaacagatgatctgacttcacttctagaggatcggtctgtcctt
ttgtaccccgtcaatgaactcatttcatcagaaatcgcagttgcaagccctgaattgcgg
gcgcagcgattagatgtcattaatagactaacgaatggagaagcgccaattgtcgttgct
ccggtagctgcaatcagaagaatgctgccgcctgttgaggtgtggaaaagcagccagatg
ctcattcaagtaggccatgatattgaacctgaccagcttgcctcacggctggtagaggta
gggtatgagcggtctgatatggtttctgcgcccggggaattcagtattcgcgggggaatc
attgacatttatccgctgacttcagagaatccggtgagaattgaactttttgacaccgag
gtggattcaatccgcagctttaattcagatgatcagcggtcaattgagacccttacctcg
atcaatatcggtcccgcgaaggaattaattatcagaccggaagaaaaagcgcgggcgatg
gagaaaatcgatagtggtcttgccgcgagcttgaaaaaattaaaggctgacaaacaaaaa
gaaatacttcatgcgaatatttctcacgataaagaacgcttgtctgaaggccagacagat
caggagctcgtgaagtatctctcatatttctatgaaaagcctgctagtttactagattat
acacctgataatacacttctgattttggatgaagtcagtcggattcatgagatggaagaa
cagcttcaaaaagaagaagcggagtttataacaaatcttcttgaggaagggaagattttg
catgacattcgtttgtcattcagcttccaaaaaatagtggctgagcaaaaacggcctctg
ctgtactactctttatttttgcggcatgtacaccatacgagcccgcaaaatatcgtcaat
gtgtcaggccggcaaatgcagagtttccatggccaaatgaacgtgcttgcgggcgaaatg
gagcgttttaaaaaatcaaatttcactgttgtgttcttaggagcaaacaaggaacgtacg
cagaaattgtcatctgttttggctgattatgatatcgaggccgccatgacagacagcaaa
aaagcgcttgttcagggacaggtctatatcatggaaggcgagctccaatcgggatttgag
ctgccgttaatgaagcttgccgttatcacggaagaagaactgttcaaaaaccgtgtaaag
aagaagccgcgaaaacagaagcttaccaatgcagagcgcatcaaaagctattctgagctt
caaattggagattatgtcgttcatattaatcacgggatcggaaaatacctggggattgaa
actcttgaaatcaacggcattcataaagactatttaaatatacattatcagggcagtgac
aagctttacgtccctgtagaacaaattgatcaggtccaaaaatatgttggctccgaagga
aaagagccaaagctgtataaattaggcggaagtgaatggaagcgggtcaagaaaaaagta
gagacatccgttcaggatattgctgatgacttaattaagctgtatgccgaaagagaagcg
agcaagggctatgcgttttctcctgaccatgagatgcagcgtgaattcgaatcggctttc
ccttatcaagagactgaggatcagctccgttctattcacgaaatcaaaaaagacatggaa
agagaacgtccgatggaccgcttgctgtgcggagatgtgggctacggtaaaacagaggtt
gccatacgtgccgcgtttaaggcgatcggtgacggaaagcaggtagctctgctcgttccg
acaaccattttggcacagcagcactatgaaaccataaaagagcgcttccaggactatccg
attaatatcggccttctcagcaggttcagaacgagaaaagaagcaaacgaaacaatcaaa
gggctgaaaaatggaacggttgatatcgtcatcgggacgcatcggctgctatcaaaggat
gtcgtgtataaagacttagggctcctcatcattgatgaagagcagcgtttcggtgtaacc
cataaagaaaagatcaagcaaataaaagccaatgttgatgtattaacgttaacagcaacg
ccgattccgcgtacgctgcatatgtctatgcttggcgtaagggacctttcagtcatcgag
actccgccggaaaatcgcttccccgtacagacgtatgttgtggaatataacggcgctctt
gtcagagaggcgattgaacgtgagcttgcacgcggaggccaggtctatttcttgtacaac
cgggtagaggacattgagcggaaagcggatgaaatttcaatgctagtccctgacgcgaag
gtagcatatgcgcatgggaaaatgacagaaaatgaattagaaaccgttatgctaagcttc
cttgaaggagaatcagacgttctcgtcagcacaaccattatcgaaactggcgtggacatc
ccaaacgtcaatacgctgatcgtatttgacgccgacaagatgggactttctcagctttac
cagctgcgggggcgtgtcggccgttctaaccgtgtggcgtatgcgtacttcacgtatcgc
cgggataaagtgctgacagaagtggctgaaaaaaggctgcaggctattaaagaattcaca
gagttaggttccggttttaaaatcgcaatgcgtgacttaacgattcgcggagccgggaat
cttcttggtgcccagcagcatggcttcatcgattcggtcggatttgacctctattcacaa
atgctgaaggaggccattgaggagcgtaaaggagacacagcgaagacagagcagtttgaa
acagaaattgatgtcgagcttgatgcgtatattccggaaacttatattcaagacggcaaa
cagaaaattgatatgtataaacgcttcaggtctgtggcgacaatcgaagagaagaatgag
cttcaagatgaaatgatcgaccgctttggaaactatccaaaagaagtcgaatacttgttt
actgttgcagaaatgaaagtctatgcgagacaggaacgtgtcgagctgattaagcaggat
aaagatgctgtcagattgacgatttctgaagaagcaagtgctgaaattgacgggcagaag
ctgtttgagcttggcaatcaatatggcagacaaatcggactgggaatggaagggaaaaaa
ctcaaaatctccatacagacgaaaggccgtagtgctgatgaatggctcgacaccgtgctg
ggcatgctgaagggcttaaaagatgtgaaaaagcaaaccatttcatcaacgtaa

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