KEGG   Bifidobacterium adolescentis 22L: BADO_1419
Entry
BADO_1419         CDS       T03260                                 
Name
(GenBank) ATP-dependent DNA helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
badl  Bifidobacterium adolescentis 22L
Pathway
badl03420  Nucleotide excision repair
badl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:badl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BADO_1419
   03430 Mismatch repair
    BADO_1419
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:badl03400]
    BADO_1419
Enzymes [BR:badl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BADO_1419
DNA repair and recombination proteins [BR:badl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BADO_1419
   MMR (mismatch excision repair)
    Other MMR factors
     BADO_1419
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 PDDEXK_1 UvrD_C_2 AAA_30 DEAD
Other DBs
NCBI-ProteinID: AII76827
UniProt: A0A076JJL8
Position
1730555..1734640
AA seq 1361 aa
MSTNGATAKGDAMGTVPAATPKFTDSPEQAAVIQAPSYEDVVVVAGAGSGKTYTMTRRII
TLIDQGISPEKILGLTFTRKAASELLSRVSAAVTRNQAGRGTRVAFLKPEVSTYDAFFQT
IVRQYGLLVGFDQNTQPLSEAGALQLIHTVLDKHMDQLMAFDQGGDELGKFSTIAGNVFT
LSNAIAGAMIGSDCTSFDEAVERVRAWDKAFVAQVAKALEDEDVPDDEPKVGKAPKQKKK
ESDTAFETRMREYRAQCHQLCVYKTAQLAGTARKRDLLLDLVADYHAEKRALNMAEFSDF
TIAAFQLVTRFPSIGATYRKRYTHVLLDEYQDTSTTQAALLTALFHADSTHRSAVNAVGD
PFQSIYAWRGASPGAFRMLQHDFGHDATDKPYTLTVTRRNSRMVLEAANNLTKPLRLPAR
RRGSSLMREVDVPPLANIDNASEGTLGVLGYATFGQEIDAIVRFAKQAIALHTPTENELA
DGVKDNRPHVALLFRSKTQMPAYEDALEQAGLTTLVVGQAALLERPEIKDILALLHVVCD
HTDSAALMRLLATPRFGLSADDLQALAGIAERLNTAQRYRALVSAGIVEADANPSDADIR
ATVRAYRDQVPNAVFLIDVLLRGDLRHLVDGVLSRTGAASVIHAGRVIQQVQRTAGHPLP
EVVRTAITALGLDIDLLLAERMRHPDAGNRATSHAASSLDAMLSLVDTYLQEIAAQGTPS
LRAFISWVDSLRDASDDNATAPDTPVDVVLMTVHQSKGLEWDAVAVVGMRDGTFPSSQGD
HLSVKTDEDHPGGRRDGVWEPPEYFEKAHTWLEDPSAVPVPVRADADILPRFPHDAPIGG
NPVESLDGLDDAEVIDDEVFGTLRTMAVDDMEGMDPASLYLTQQEEYGRRLHADERRLAY
VALTRARYEALLVYSGCNETSRDSRLAEGKKSAAPSNFWLETRDSMNGIVTAVREPDNLS
DDVDGSPHTLGLDLPDGYFVGEHARDFENAVVGDAWNTPLEPVSDDHTLPWPCDLSADVA
DKLRAAAEQVRAVESDEPNIAESTGTQGDVADESATPSPETGNSLLRLAKLLVADEHLMP
EPDAADAGESQDAFDEAVRAKGERILAAGRQNVTSLQARAGSMGERDSRAYWRGLVRPIP
HVASPAAQLGTRFHAWAERFIMADADVDGIGGTEGAAGMAAQSRAELIALIGDTQVDADN
GGVQSQDAPSQDAQLRDERKLAAWQRRLVASPWAKRRPAWAERQLVVDMSQLGTIVNGKL
DAVFFGGLDETDEMKRYTVVDWKTGVKPRKPDEIKEKLAQLDLYRLLLAAMEGVPLDAID
ACLYYVSEPHEADRELDALDKTEEEILAELSYGIPQQSDND
NT seq 4086 nt   +upstreamnt  +downstreamnt
atgtcaacgaacggggccacagcaaagggcgatgcgatgggcactgtgccggccgccacg
ccgaaattcaccgacagtccggaacaggccgccgtcatccaagccccctcatacgaggac
gtggtcgtggtggcgggcgccggctccggcaaaacctacaccatgacccgccgcatcatc
accctcatcgaccagggcatcagtcccgagaagattctgggcctgaccttcacacgcaaa
gccgcctccgaactgctttcgcgcgtctccgctgccgtgacacgcaaccaagccggacgc
ggtacacgcgtcgccttcctcaaaccggaagtctccacctatgacgcgttcttccaaacc
atcgtgcgccaatacggcctgctcgtcggcttcgaccaaaacacgcagccattgagcgaa
gccggagcgctgcagctcatccacaccgtgctcgacaagcacatggaccagctcatggcc
ttcgaccaaggcggcgacgaactcggcaaattctccaccatcgccggcaacgtgttcacc
ctatccaacgccatcgcaggagccatgatcggcagcgactgcaccagcttcgacgaagcc
gtggaacgcgtgcgcgcatgggataaggcgttcgtggcgcaagtggccaaagcgcttgaa
gacgaggacgttcccgatgacgagccgaaagtgggcaaggctccgaaacagaagaaaaag
gaatccgacaccgccttcgaaacccgcatgcgcgaataccgcgcccaatgccaccaactc
tgcgtctacaagaccgcgcaattggccggcacggcccgcaaacgcgacctgctactcgac
ctcgtggccgactaccacgccgaaaaacgcgccctcaacatggccgaattcagcgacttc
accatcgccgcattccaactcgtcacccgattcccctccatcggagccacctaccgcaaa
cgctacacgcacgtgctgctcgacgaataccaagacacctccaccacgcaggcggccctc
ctgaccgcactgttccacgccgattccacccatcgcagcgcggtgaacgccgtcggcgac
cccttccaatcgatctacgcatggcgaggagccagcccaggcgcattccgcatgctgcaa
cacgacttcggccacgacgccaccgacaagccctacacgctgaccgtcacccgacgtaac
tcgcgcatggtgctcgaagcggccaacaatctgacgaaaccattgcgcctgcctgccaga
cgtcgcggcagttcgcttatgcgcgaagtggacgtgcccccgctcgccaacatcgacaac
gcctccgaaggtacgctcggcgtgctcggctacgccacattcggccaggaaatcgacgcc
atcgtacgcttcgccaaacaagcgatcgcactgcacacgccaaccgaaaacgagctcgcc
gacggagtcaaagacaaccgtccgcacgtggcgctcctgttccgctccaaaacgcagatg
ccagcctacgaggacgcactggaacaagccggcctcaccacactcgtcgtcggccaggcc
gcactcctggaacgtcccgaaatcaaagacatcctcgccctgctgcacgtcgtatgcgac
cacaccgacagcgctgcgctcatgcggctgctcgccacgccacgattcggtctgtccgcc
gacgatctgcaggcgctcgccggcatcgccgaacggctcaacaccgcgcaacgctaccgc
gcgctcgtgtcggccggcatcgtggaggcggatgcgaatccgtccgacgccgacatccgc
gccaccgtgcgcgcctaccgcgaccaagtgcccaacgccgtcttcctgatcgacgtgctg
ctgcgcggcgatctgcggcacctcgtcgacggcgtattgagccgtacgggagccgcgagc
gtcattcacgccggtcgcgtcatccaacaggtgcagcgcacggccggccatccgttaccg
gaagtggtacgcacggccatcaccgcgctcggactggacatcgacctgctgctcgccgaa
cggatgcggcatccggatgccggcaatcgtgccacatcgcatgccgcttcgtcactcgac
gcgatgttgtctctggtggacacctacttgcaggaaatcgccgcgcagggcacgccaagc
ctgcgcgcgttcatctcgtgggtggattcgctgcgtgacgcgtccgacgacaacgccacc
gcaccagatacccccgtcgatgtggtgctcatgaccgtgcaccagtcgaaaggcctggaa
tgggacgccgtggccgtggtcggcatgcgcgacggcaccttcccgtccagtcaaggcgac
cacctgagcgtcaaaacggacgaagaccatccgggcggtcggcgcgacggcgtatgggag
ccgccggaatacttcgaaaaagcccacacttggctggaagacccgtccgcggtgccggtt
ccggtgcgcgccgacgcggatatcctgccacgattcccgcacgacgcgcccatcgggggc
aatcccgtggaatcgctcgacggattggacgatgcggaagtgatcgacgacgaggtgttc
ggcaccttgcgaaccatggccgtcgacgatatggaaggaatggatccggcaagcctgtac
ctgacgcaacaggaggaatacggccgccgactgcacgccgacgaacgccgtctcgcctac
gtggcgttgacgcgcgcccgctacgaggcgctgctcgtatacagcggatgcaacgagacg
agccgcgactcccgcctggcggagggaaagaaaagcgccgcgccgtcgaatttctggctg
gagacgcgcgattcgatgaacggaatcgtcaccgcggtacgcgaaccggacaacctgtcc
gacgatgtggacggctccccgcacacgctgggacttgacctgcccgacggctatttcgta
ggcgaacacgcccgcgatttcgagaatgccgtggtgggcgatgcgtggaacacgccgctc
gaaccggtctcggacgaccatactttgccttggccgtgcgatctgagcgccgatgtcgcc
gacaagctgcgtgccgcggccgaacaggtacgtgccgtcgaatccgacgaaccgaatatc
gctgaatccacgggaacgcagggcgacgttgccgatgaatccgccacgccatcgccggaa
accggaaactcactgctgcgtctcgccaaactgctcgtcgccgacgaacatctcatgccg
gaaccggacgcggctgacgcaggcgaatcgcaggacgccttcgacgaggccgtgcgtgcc
aaaggcgaacgtatccttgctgccggccgccaaaacgtcacctcgctgcaagcgcgcgcc
ggctccatgggcgagcgtgactcccgcgcctactggcgtggtctggtccgtccgattccg
cacgtcgcctcgccggcggcacagctcggcacgcggttccacgcatgggctgagcgtttc
atcatggcggatgcggacgtcgacggcatcggtggtacggaaggtgctgccggtatggcc
gcgcagtcgcgtgcggaactgatcgcattgataggtgatacgcaagtcgacgcggacaac
ggcggcgtgcaatcgcaggacgcaccatcgcaggacgcccaattgcgagacgaacggaaa
ctggccgcttggcagcgtcgtcttgtcgcttcgccgtgggcaaaacgacgtccagcatgg
gcggaacgccagctcgtcgtcgacatgtcccagctcggcaccatcgtcaacggcaaactc
gacgcggtgttcttcggcggtctcgacgaaacggacgagatgaaacgctacaccgtggtc
gattggaaaaccggcgtaaaaccacgcaaaccggacgaaatcaaggagaagctcgcacag
ctcgacctgtaccgcctgctgctcgcggcgatggaaggggttccgttggatgcaatcgac
gcctgtctctactatgtgagtgagcctcacgaggccgatcgggagcttgacgccctcgac
aaaacagaagaagagatccttgccgagttgagctacggaattccgcagcaatccgacaac
gactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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