KEGG   Bifidobacterium adolescentis BBMN23: BBMN23_1091
Entry
BBMN23_1091       CDS       T03774                                 
Name
(GenBank) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bado  Bifidobacterium adolescentis BBMN23
Pathway
bado03030  DNA replication
bado03410  Base excision repair
bado03420  Nucleotide excision repair
bado03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bado00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BBMN23_1091
   03410 Base excision repair
    BBMN23_1091
   03420 Nucleotide excision repair
    BBMN23_1091
   03430 Mismatch repair
    BBMN23_1091
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bado03032]
    BBMN23_1091
   03400 DNA repair and recombination proteins [BR:bado03400]
    BBMN23_1091
Enzymes [BR:bado01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BBMN23_1091
DNA replication proteins [BR:bado03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BBMN23_1091
DNA repair and recombination proteins [BR:bado03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BBMN23_1091
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BBMN23_1091
   MMR (mismatch excision repair)
    DNA ligase
     BBMN23_1091
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BBMN23_1091
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH HHH_3 UPF0758_N
Other DBs
NCBI-ProteinID: AJE06063
Position
complement(1251122..1253794)
AA seq 890 aa
MTNRDDSEQLAWDFDAPESDGSSAAVVADEGLASLTPGSERWIAALQPTDADAMRLDKVD
VASMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQSLEAQFPSLDSP
QSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELREWYDGVLRGLDWPESKPLPMTCE
VKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPEFVEIR
GEVFMRWDDFNKLNAENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIGSLR
WGAGHAGNGHDVVNDQSEAYELYKKWGVPVSPHNREVTSFKEILDMIDYYGEHRGDIEHA
LDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVTPVAVL
KPVYVAGSTVSRTTLHNPFEVERKGVLIGDTVVVRKAGDVIPELVGPVLERRKGREGQIR
RFVMPTRCPSCGAELAPAKEGDKDIRCPNVESCPAQLTERIINLASRKAFDIEHLGDQSA
IALTNPEEDRPDSIDTYAPNITEIVVKPGEEPEPYEPVAGLELPPMQTPVLSSEAGLFSL
TSADLKDVRVWREAPIIEIHETVGSNGKIKKVRKRVGGSGLWHQVPAFWTAPTAARKRKE
ADIDETAEYPQYVVPDDAVVIREEIKVSRGGTSSVQPVYIRPAENTRKMLDEMDKARHAD
LWRVLVALSIRRLGPPTARTIASAFGTLDAIEHASVDELSQIDGIGPEIAESVVTWFTAA
REPGNWRGAVLDAWKAAGVGVGQAQASGLPQTLAGKTVVVTGSLEGFSRDSAKEAIVLRG
GKAAGSVSKKTDWVVVGENAGSKAAKAEELGIPMLNEDQFKQLLDTGTVE
NT seq 2673 nt   +upstreamnt  +downstreamnt
atgacgaatcgtgatgattccgaacagttggcatgggatttcgacgcgccggagagcgac
ggtagttccgcggccgtcgtggccgatgaggggctggcttcgctgactccgggcagcgaa
cgttggattgccgcgttgcagccgaccgatgccgacgccatgcgcctcgacaaggttgat
gtggcttcgatgagcgccgaagccgcggccaggctgtgggcgcgcgtggccgcatgggtg
gaatcagaccagatcgcatactatatcgacgatgcccccgtctcatccgacgcggcatat
gacgcaagattgcgctgcctgcaatcgcttgaggcgcagttcccatcacttgactcaccg
cagtcaccgacccatcgtgtgggcggcacgttctccaacgacttcgcttccgtacgtcat
ccatcgcgcatgatgagcctcgatgacgtgttctccatcgaggagctgcgcgaatggtac
gacggcgtgctcaggggattggattggcccgaatcgaagccactgcccatgacctgcgag
gtgaaaatcgacggtcttgcgctgaacctcatctaccgcaacggcgtgcttgaacagggt
ctgaccagaggcgatggcgtgaccggcgaggacatcactctcaacgtgcgcaccatctcc
accattccgcagaaccttgccggaccggaggaagacattcccgaattcgtggagatccgc
ggcgaagtgttcatgcgatgggacgatttcaacaagctgaacgccgagaacgaggacgcc
ggtcgcgcgccattcgccaatccccgcaacgcggccgcaggtagcctgagacagaaggat
ccgcgtatcaccgcaacccgtcgcctgagcttctacgcgcacggcatcggatcgctgcgt
tggggtgcggggcacgccggcaacggccatgatgtggtcaacgaccaatccgaagcctac
gaattgtataagaaatggggtgtgcccgtctctccgcacaaccgtgaggtcacgtcgttc
aaggaaatcctcgacatgatcgactattacggcgaacaccgaggcgacatcgaacacgcg
cttgacggcatcgtcgtgaaggtcgacgatttgggattgcagcgttcccttggtgccaca
tcgcgtgcgccgcgctgggccatcgcctacaaatatccaccggaagaagtcaataccgag
ctgcttgacatcactgtgcaggtggggcgcaccggacgtgtgactccggtggcggtgttg
aaacccgtgtacgtggccggttccacagtatcccgtaccacgctgcacaacccctttgaa
gtggaacgcaaaggcgtgctcatcggcgacaccgtggtggtgcgcaaggcgggagacgtg
attcccgagctcgtcggtccggtgctggagcgacgcaagggacgtgagggccagatccgc
cggttcgtgatgcccacgcgttgcccgagctgcggcgcggaactcgctcccgccaaagag
ggagacaaagatatacgctgcccgaacgtggaatcctgcccggcgcagctgaccgagcgg
atcatcaatctggcgtcccgtaaggcgttcgatatcgaacatctgggcgaccaatcagcc
attgcgctgacgaatcccgaagaggacaggcccgattccatcgacacgtatgcgccgaac
atcaccgaaatcgtggtgaaacccggtgaggagcctgaaccgtacgagccggtggcagga
ctggaactgccgcccatgcagacacctgtgctgtccagcgaggccgggctgttctcgttg
acgtccgcagacctcaaggatgtgcgcgtctggcgcgaggccccaatcatcgaaatccac
gagaccgtcgggtcaaacggcaagatcaagaaagtgcgcaaacgtgtgggcggatccgga
ttatggcatcaggtgcccgcattctggaccgcgcctaccgccgcccgcaaacgcaaggaa
gccgacatcgacgagaccgcggaatatccgcaatacgtggtgccggatgacgccgtggtg
atccgcgaggaaatcaaggtatcccgtggaggcacgtccagcgtgcagccggtgtacatt
cgtccggcggaaaacacccgcaagatgctcgacgaaatggacaaagcccgccatgccgac
ctgtggcgcgttctggtggccctgtccatccgcaggctcggaccgcccaccgcacgcacc
atcgccagcgcgttcggtacgttggatgccatcgaacatgccagcgtggacgaattgtcc
caaatcgacggtattggtccggaaattgcggaatccgtagtcacatggttcaccgcggcc
cgtgagccgggcaattggcgcggtgccgtgcttgacgcatggaaggccgccggcgtagga
gtcggacaagcccaagccagcggactaccacagacattggcaggcaaaacggtcgtggtc
accggctcgttggaaggattctcccgcgattccgccaaagaggccatcgttctgcgcgga
ggcaaagccgcaggatccgtcagcaagaaaaccgattgggtcgtcgtaggcgagaatgcc
ggctcaaaagccgcaaaagccgaggaactgggcatccccatgctcaacgaagaccaattc
aaacagctgctcgacacaggaacagttgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

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