KEGG   Bacillus anthracis CDC 684: BAMEG_0063
Entry
BAMEG_0063        CDS       T00886                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
bah  Bacillus anthracis CDC 684
Pathway
bah03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bah00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BAMEG_0063 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bah03400]
    BAMEG_0063 (mfd)
Enzymes [BR:bah01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BAMEG_0063 (mfd)
DNA repair and recombination proteins [BR:bah03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      BAMEG_0063 (mfd)
SSDB
Motif
Pfam: UvrB_inter TRCF DEAD CarD_TRCF_RID Helicase_C ResIII MFD_D3 UB2H RecG_dom3_C TniB AAA_16
Other DBs
NCBI-ProteinID: ACP14645
Position
54397..57927
AA seq 1176 aa
MIGLLEQFYKNEEIQSVINGLEDGLKEQLVSGMATSSRSFLMAALYKKTKKSQLIVTHNL
YQAQKVHEDLVALLGEKDVWLYPVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA
PVAGLRRFLPMKELWKQRQIEISLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI
LDIYPLTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSGI
KHLEEGLTKTMQKLSDDKLKTTVLETVSHEIEMLKNGQSIEQMFKYLSIFYNEPASLIDY
LPEDGVVILDEISRIQETASHLESEEAEWYISLLGEGTIIQDLSFSHSFEEFLHHKKRSF
VYLTLFLRHIAHTHPQNIVNVTCKTMQDFHGQMQLLKTEIDRWNEGHFTTVVLGTDDERV
KKLQHILSDYDIDADIVEGTDILLPGRLQIAVGDLHAGFEMPMQKLVVITEKELFHKKVK
KSQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND
KLYVPIEQIDQVQKYVGSEGKDPKVYKLGGNDWKKVKTKVEKSVQDIADDLIKLYAEREA
SKGYAYTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEV
AIRAAFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIK
GLKDGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDI
PNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTVN
VEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSAIEDIEELQEEMIDRFGDYPQEVGYLL
QIANIKVLAMKEQIELIKQNKFEVTILFSEQASQNIDGGKLFMLGNSFGRMIGLGMEGSQ
LKIVMKTNGLETSKWLTIAENLLKGLPDVKKEVINA
NT seq 3531 nt   +upstreamnt  +downstreamnt
atgataggtttattagagcaattttataaaaatgaagagatccaatcggtcattaatgga
ctagaagatggtttaaaagagcaacttgtatcaggtatggcaacatcttctcgttcgttt
ttaatggcggccttatataaaaaaacaaaaaaatcacaacttattgtgacgcataattta
tatcaagcacaaaaagtacatgaagatttagtggcgttacttggtgaaaaagatgtatgg
ctatatccagtaaatgaattgatagcatcagaacttggtgttgcaagcccagaattgaag
gcacaacgtattgaagtgttaaatcgcttagctgcaggagagcacgggattattgtagca
ccagttgcaggactacgcagatttttaccaatgaaagagttgtggaagcaaaggcaaatc
gaaatcagtctagggcaagagattgatttagatacatttttgcatactttacatcatatt
ggctatgagcgtaagtctatggtagaagctcctggagaatttagtttgcgcgggggaata
ttagatatttatccactaactgaggagctaccatttcgtattgaatttttcgatacagaa
gttgattctattcggttatttgatgtggatgaacagcgctctcaagataaaaaagaaagt
gttagattcggtccagcaacagagtttctattttcacaggaagaattgaaatcgggaata
aagcatcttgaagaaggtctgactaagacgatgcaaaaactttccgatgataagttgaag
actacagtgcttgagacggtaagtcatgaaattgagatgttaaaaaacgggcaaagtata
gaacagatgtttaaatatttatctattttctataacgaacctgctagtctgatagattat
ttaccagaagatggtgttgtgattttagatgaaatttcacgtattcaagaaacagcatct
catcttgaatcagaagaagcggaatggtatatatcccttcttggtgagggaacaattatt
caagatttatctttctctcattcgtttgaagaatttcttcatcataaaaaaagaagtttt
gtatatttaacgttattcttacgtcatatagcgcatacacatccgcaaaacattgtgaat
gtgacatgtaaaacaatgcaagatttccatgggcagatgcagttgttgaaaactgaaatt
gatagatggaacgaagggcattttacgaccgttgtgctaggtacagatgatgagcgtgtg
aaaaaactacaacatattttaagtgattatgatattgatgcagatattgtagagggcaca
gatatattattgcctggaaggttacaaattgctgtaggtgatttacatgcagggtttgaa
atgccgatgcaaaagcttgttgtcattactgaaaaagagctttttcataagaaagttaaa
aaatcacaacgtaagcaaaagttatcgaatgctgaacgcattaaaagttattcggaatta
aaagttggggattatgtagttcatgtaaatcatggtataggtaaattcttaggtattgag
acattagagattaacggtgttcataaagattatttgaatattaaatatcaaggtaatgat
aagttatacgttccaattgaacaaattgaccaagtgcaaaaatatgtaggatctgaaggt
aaggatccgaaagtttataaattgggcggaaacgattggaaaaaggtcaaaacaaaagtt
gaaaaatctgtacaagacattgcggatgacctcattaaactctatgctgagcgcgaagct
tcaaagggttatgcatatacaccagatacggcagaacaacaagaatttgagtcttctttc
ccgtatcaagagacagaggatcaattacgttctattgaagagattaaaaaggatatggaa
cgcggacgtccgatggataggcttctttgtggtgatgtaggatatggaaagacggaagta
gctattcgtgcggcgtttaaagcaattatggatgaaaaacaagttgcaattttagtgccg
acaacgatccttgcacaacaacactatgaaacaattcgagagcgttttcaagattatcca
atcaatataggattattaagtagattccgtacgagaaagcagcaaaatgaaacaattaaa
ggtttaaaagatggcacggtagatattgtaatcggaacgcatcgtattttatctaaagat
gttacttataaagatttaggtcttcttattattgatgaagaacaaagatttggcgtaaca
cataaagaaaaaattaaacaattaaaagcaaatgttgacgtattaacattaacggcaacc
ccgatcccgcgtacgcttcatatgtctatgcttggtgtacgtgatttatctgttattgag
acgccgccggaaaatcgtttcccagttcaaacatatgtagttgagtataatccagcgtta
atgcgagaggcgatagaacgcgagcttgcaagaggtgggcaagtttacttcctatataat
cgtgtggaggatatcgaacgaaaagcagatgaaatttcgatgttagttccagatgcacgt
gtcacttatgcacatgggaaaatgaacgaaagtgaattagagtctgttatgctatcgttt
ttagaagggcagcatgatgttcttgtaagtacaacgattattgagacaggtgtagatatt
ccgaatgtaaatacattaattgtatttgatgcagatcgtatgggattatcgcagttgtat
cagcttcgtgggcgtgttggacgttctaatcgtgttgcatatgcttactttgcatacaaa
cgagataaagtgttatcagaagttgcggagaagcgtctgcaagccattaaggagttcaca
gagcttgggtctggtttcaaaattgcgatgcgagatttatcaattcgtggtgcaggtaac
ttgttaggagctgaacaacatggatttattgattctgtcggatttgatttatattctcaa
atgttaaaagacgcaattgaacagcgtagaggaacagacggagttgaaaatacagttaat
gttgaaattgatttagaagtagatgcatatttaccagatgcttatatttcggatagtaaa
caaaaaattatgatgtataaacaatttagaggtgtttctgcgattgaagatattgaagag
ttgcaggaagagatgatagatagatttggtgattacccgcaagaagttggttacttatta
caaattgcaaatattaaagtattggcaatgaaagaacaaattgaattaattaagcaaaat
aaatttgaagtaacaattctgttctcagaacaagcgagtcaaaatattgatggtggaaaa
ttattcatgctcggaaatagttttggacgtatgatcggtttaggaatggaaggatcacaa
ttgaaaatcgtcatgaaaacaaatggcttagagacatcgaagtggttaacaattgctgaa
aatttattaaaaggcttgccagatgtaaaaaaagaagtcataaatgcctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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