KEGG   Bacillus velezensis UCMB5033: RBAU_3560
Entry
RBAU_3560         CDS       T02795                                 
Symbol
rho
Name
(GenBank) transcriptional terminator Rho
  KO
K03628  transcription termination factor Rho
Organism
bama  Bacillus velezensis UCMB5033
Pathway
bama03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bama00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RBAU_3560 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bama03021]
    RBAU_3560 (rho)
   03019 Messenger RNA biogenesis [BR:bama03019]
    RBAU_3560 (rho)
Transcription machinery [BR:bama03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     RBAU_3560 (rho)
Messenger RNA biogenesis [BR:bama03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RBAU_3560 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB ATPase_2 NACHT AAA_22 AAA Spore_III_AA AAA_25
Other DBs
NCBI-ProteinID: CDG31526
Position
complement(3685976..3687262)
AA seq 428 aa
MKDVSISSLENMKLKELYELARHYKISYYSKLTKKELIFAILKANAEQEDLLFMEGVLEI
IQSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVEA
VNGDDPESAKERVHFPALTPLYPDRQMVLETKPNYLSTRILDMMAPVGFGQRGLIVAPPK
AGKTMLLKEIANSITTNQPDAELIVLLIDERPEEVTDIERSVAGDVVSSTFDEVPENHIK
VAELVLERAMRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIR
RSGTRKEELLVPKEHLDRLWAIRKSMSDSPDFAEKFMRKMKKTKTNQEFFDLINQEWKQA
NLSSSARR
NT seq 1287 nt   +upstreamnt  +downstreamnt
atgaaagacgtatctatttcctctttggaaaatatgaaattaaaagaactatatgaactg
gccagacattataaaatctcctactacagcaaactgactaaaaaagaattaatctttgcc
attctgaaagccaacgccgagcaggaggatcttctgtttatggaaggcgtgctcgaaatc
atccaatcggaaggattcggcttcctcagaccgattaattactcgccaagctcagaagac
atctacatttctgcttcccagatccgccgctttgatttaagaaacggtgacaaagtatcc
ggcaaggtgcgtccgccgaaagaaaacgaacgctattacggacttttgcacgttgaagcg
gtaaatggagacgatccggaatctgcgaaggagcgcgtccattttcctgcgctgactccg
ctttatccggaccgccaaatggtgcttgagacgaaaccgaattatctctcaacaagaatt
ctcgatatgatggctcccgtcggtttcggccagcgcggtctgatcgtggcgccgccgaaa
gccggtaaaaccatgctgttgaaagaaatcgctaacagcattacgacaaatcagcctgac
gctgaattgatcgttctcttaattgatgaaagaccggaagaagtaacggatattgaacgt
tccgtagcgggcgatgtcgtcagctcgacgttcgatgaagtgccggaaaatcacattaag
gtagcggagcttgtgcttgaacgggcgatgcgtctcgttgaacataaaaaagacgttatc
attctgatggacagcattacccgcctggcacgggcctacaacctcgttatcccgccaagc
ggacgtacgctttccggcgggattgacccggctgcgttccatcgtccgaagcgctttttc
ggtgccgcgagaaacattgaagagggcggcagtctgaccattttggcgacggcgctcgta
gacacgggctcccggatggatgacgtcatctatgaagagtttaaaggaacgggcaacatg
gagcttcaccttgaccgttctcttgcggaaagacggattttcccggcgatcgatatccgc
cgctccggcacacggaaggaagagctgctcgtgccgaaagagcatcttgaccgtctatgg
gcgatccgcaaatcgatgtctgattctccggacttcgcagagaagtttatgagaaaaatg
aaaaaaacaaaaacgaatcaggaattcttcgatctgatcaaccaagaatggaagcaggca
aacctttcatcatcagcccgccgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (18)   

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