KEGG   Bacillus amyloliquefaciens CC178: U471_25520
Entry
U471_25520        CDS       T02893                                 
Name
(GenBank) helicase, RecD/TraA family protein
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
bamc  Bacillus amyloliquefaciens CC178
Pathway
bamc03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bamc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    U471_25520
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bamc03400]
    U471_25520
Enzymes [BR:bamc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     U471_25520
DNA repair and recombination proteins [BR:bamc03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     U471_25520
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_4 SH3_13 UvrD_C_2 AAA_11 Viral_helicase1 UvrD-helicase HHH_5 AAA_22 UvrD_C AAA_12 AAA_16 nSTAND3 DEAD T2SSE AAA AAA_18 NTPase_1 Zeta_toxin AAA_28 AAA_17 Rad17 TsaE AAA_29
Other DBs
NCBI-ProteinID: AGZ57250
Position
complement(2574017..2576395)
AA seq 792 aa
MDQLNIEEQPYVKGVIHTVIYHNDTNLYTVLKVKVAETSEAIEDKVVSVTGYFPLLQEDE
TYTFYGKTATHPKFGLQFQAEHFKKEIPTTKEGIIHYLSSDLFEGIGKKTAEEIVKKLGD
GALNKILTDASVLYDVPKMSKKKADKLAGELQRHQGLEQIMISLNQYGFGPQLSMKIYQA
YETETLEKIQENPYQLVKDVEGIGFVKADELGGKMGLSGNHPERIKAAILYTIESTCLSE
GHTYIETKQLIINTQTLLNQSAEGGRVTEMDAADGIIALGESKDIVIEGERCYFPSLFYA
EQNVAKRVLDIAAQTEYADQFPESEFLLALGELEERMNVQYAPSQKDAIQKALSSPMLLL
TGGPGTGKTTVIKGIVELYSELHGVSLDPGDYKKDEAFPVLLAAPTGRAAKRMSESTGLP
AVTIHRLLGWNGAEGFTYNEDQPIEGKLIIIDEASMLDIWLASHLFKALPKHIQLIVVGD
EDQLPSVGPGQVLRDLLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAPTK
DRSFIRCNSSQIKEVVDQVVSNALKKGYTSRDIQVLAPMYRGKAGINELNMLLQDIMNPP
KEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEIVSIFYAKENTEKEDMVVVSFD
GNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKF
LILCGEEEALEWGVKNNDATVRQTSLKNRLTEQTEEMDAELAALQKELPFSVYDANIGME
GITPFDFMEEKA
NT seq 2379 nt   +upstreamnt  +downstreamnt
gtggatcagctgaacatcgaagaacagccgtatgtaaaaggcgtcattcatacggtcatt
tatcacaatgacaccaacctgtatacagtgctgaaagtcaaggttgcagaaacgtctgag
gcgatcgaagacaaggtcgtatccgtaacgggctacttccctctgctgcaagaagatgag
acctacacattttacggaaaaaccgccacgcatcctaagttcggcctgcaatttcaggct
gaacactttaaaaaagaaattccgaccacaaaagaagggatcattcactatttatcaagt
gatctgtttgaaggaatcggaaaaaaaacggcagaagaaatcgtcaaaaagctcggagac
ggcgcgctcaataaaattctgacggatgcgtcggtgctttacgatgtgccgaaaatgtcg
aaaaagaaagcggataagcttgccggagagctgcagcggcatcaggggcttgagcagatt
atgatctctctgaaccaatacggtttcgggccccagctatccatgaaaatatatcaggcc
tacgaaacggaaacactggagaaaattcaggaaaatccttatcagcttgtaaaagacgtt
gaaggcatcggctttgtgaaagctgacgagctgggcggaaaaatgggtctgtcaggaaac
cacccggagcggatcaaagcggcaatcttatatacgattgaatcgacctgtctttcagaa
ggccatacgtacatagagacaaagcagctgataatcaatacgcaaacgctcctgaatcag
tcagctgaaggcggccgcgtcacggaaatggatgcggctgacggcatcatcgccctcggg
gagagtaaggatatcgtcattgaaggagagcgctgctattttccgtccttgttttacgcc
gaacaaaatgtcgcaaaacgcgtgctcgacattgcggctcagacggagtatgccgatcaa
tttcctgaatcggaatttctgcttgcactcggtgaactggaagaacggatgaatgttcaa
tacgcaccaagccaaaaggatgccattcaaaaagcgctgtcttcaccgatgcttttactg
accggaggacctgggacggggaaaacgaccgttattaaaggaatcgtggaattatacagt
gaactgcacggagtatcgcttgaccccggtgattataaaaaagacgaggcgttcccggtg
ctgcttgccgcgccgacgggaagagccgcaaaacggatgagcgaatctacgggtctgccg
gctgttacgatacacaggctgctcggctggaatggcgctgaagggtttacctacaatgaa
gatcagccgatagaagggaaactgatcattatagacgaagcgagtatgctcgatatctgg
ctcgccagccatttgtttaaggcgcttcctaagcacattcagctcattgtcgtcggtgat
gaagaccagcttccttcagtaggaccggggcaggtgctcagagaccttttggcttctgag
gtactgccgaccgtgcgcctgacagatatttaccgtcaggctgaaggatcatccattgtg
gaacttgcgcatgatatgaaaaaaggactgcttccaaaggggctgaccgcgccgacaaag
gaccgctcatttatccgctgtaattcttcacagattaaagaagtcgtggatcaggtcgtc
tcgaacgcgttaaaaaaggggtatacctccagggatattcaagtgcttgccccgatgtac
aggggaaaagcgggaattaacgagctgaatatgcttcttcaagacatcatgaatccgccg
aaagaaaaaaggcgggagctgaaattcggtgatgtcgtctacaggacgggcgataaaata
ttacagcttgtcaaccagccggaaaacaatgtgtttaacggcgatatcggcgaaatcgta
tccattttttatgccaaagaaaatacggaaaaagaagacatggtcgtcgtctcgtttgac
ggcaacgaaatcacctttacgaaaaaggatttcagccagtttacccacgcttactgctgt
tccattcataagtcgcagggaagcgaattcccgattgtcgtcctgcctgtcgtcaaaggc
tactatcgaatgctcaggagaaatctgctttataccgccataacaagggcgaaaaaattt
ctgattctttgcggagaagaagaagcgcttgaatggggcgtcaaaaacaatgatgccacc
gtcagacagacgtcgcttaaaaacaggctcacagagcagactgaagagatggatgcagaa
ctggccgccctgcaaaaagagctgccgttcagtgtatatgatgcgaacatcggaatggaa
ggcatcacgccgtttgactttatggaagaaaaagcgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (25)   
   Pfam (25)   
All databases (34)   

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