KEGG   Bacillus velezensis SQR9: V529_04540
Entry
V529_04540        CDS       T03384                                 
Symbol
ydbR
Name
(GenBank) ATP-dependent RNA helicase DeaD
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
bamy  Bacillus velezensis SQR9
Pathway
bamy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bamy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    V529_04540 (ydbR)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bamy03019]
    V529_04540 (ydbR)
   03009 Ribosome biogenesis [BR:bamy03009]
    V529_04540 (ydbR)
Enzymes [BR:bamy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     V529_04540 (ydbR)
Messenger RNA biogenesis [BR:bamy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     V529_04540 (ydbR)
Ribosome biogenesis [BR:bamy03009]
 Prokaryotic type
  rRNA helicases
   V529_04540 (ydbR)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Helicase_RecD CMS1 MRP-L47 DUF4455
Other DBs
NCBI-ProteinID: AHZ14480
Position
463276..464700
AA seq 474 aa
MGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKMNPESPNIQAIVIAPT
RELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLDHINRRT
IRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTE
PEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELAEA
LNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQ
DPESYVHRIGRTGRAGKTGMAMTFITPREKNMLRAIEQTTKRKMDRMKEPTLDEALEGQQ
QMTVDRLRTAISENNLNFYMTAAAELLEDHDAVTVVAAAIKMATKEPDSTPVRLTDEAPM
VSKRYKNQRTSKRREGQGGGYRGGKGKTNNRSSYDKKRSSDRRSSGDRRQKKSY
NT seq 1425 nt   +upstreamnt  +downstreamnt
atggggtttgaagaagcaacgccgattcaggcacaaacgattccgctcggactttcaaat
aaagacgtcattggacaagcgcaaacaggtacaggtaaaacagctgcgtttggtataccc
cttgttgaaaaaatgaaccccgagtctcctaatattcaagcaatcgtaatcgcgccaacc
cgtgaattagccattcaagtatctgaagagttatataaaatcggacaagataagcgtgcg
aaagtgctgcctatttatggcggacaggatatcggacgtcagatccgcgcattgaagaaa
aacccgcatatcatcgtaggtacgccggggcgtcttcttgaccatatcaaccgccgtacg
atccgtttaaacaacgtgaatacggttgtcatggatgaggctgatgaaatgctgaacatg
ggattcattgatgatattgaatccattctctcaaatgtaccgagcgagcaccaaacgctc
ttattctcagcaacaatgcctgcgccgatcaaacggatcgcagagcgtttcatgactgag
ccggaacacgtaaaagtaaaagcgaaagaaatgactgtgtccaacattcagcagttctac
ttggaagtgcaggaacgcaaaaaattcgataccctgactcgtcttcttgacattcagtct
ccggaacttgcgatcgtattcggacgtacgaaacgccgtgtcgatgagcttgctgaagcc
ctgaaccttcgcggatatgcggccgaaggaattcacggcgacttaacgcaggcgaaacgt
atggttgcgcttcgtaaatttaaagaaggtgcgattgaagtgcttgtagcgactgacgtt
gccgcccgcggacttgatatctcaggcgttacccacgtttacaactttgacgtgcctcaa
gatcctgaaagctacgttcaccgtatcggaagaacgggacgcgcaggaaaaacgggtatg
gcgatgacgtttatcacaccgcgtgagaaaaacatgcttcgcgcgatcgaacaaacgaca
aaacgcaaaatggaccgcatgaaagagccgacgcttgacgaagcattagaaggtcagcag
cagatgacggttgaccgtctgcgcacggcgatcagcgaaaacaacctgaacttctacatg
acggcagctgcggaattgttagaagatcatgatgcagtgacagttgtggctgcagccatt
aaaatggcgacaaaagagccggacagcacgcctgtacgcctcactgatgaagcgccgatg
gtcagcaaacgctataaaaaccagcgtacttctaagcgcagagaaggccaaggcggcggc
taccgcggcggcaaagggaaaaccaacaaccgttcttcctacgataaaaaacgctcaagc
gaccgccgttcttcaggtgacagacgccagaaaaaatcatactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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