KEGG   Bifidobacterium angulatum: BBAG_1236
Entry
BBAG_1236         CDS       T03930                                 
Name
(GenBank) DNA-directed RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
bang  Bifidobacterium angulatum
Pathway
bang03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bang00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BBAG_1236
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bang03021]
    BBAG_1236
   03400 DNA repair and recombination proteins [BR:bang03400]
    BBAG_1236
Enzymes [BR:bang01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BBAG_1236
Transcription machinery [BR:bang03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BBAG_1236
DNA repair and recombination proteins [BR:bang03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BBAG_1236
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 DUF5887
Other DBs
NCBI-ProteinID: BAQ96858
UniProt: C4FGE5
Position
complement(1577870..1581436)
AA seq 1188 aa
MATTTAKTNTNTNIARADQHDIDLHKASDRVNFGSIKEPIDVPYLLGVQTDSFDWLIGAD
RWKKRVEEDEKNGTITTPHVSGLDEVFNEISPIENFAQTMSLTFSDPYFEEPRHTVQECK
EKDYTYSAPLYVNAEFENGETGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSP
GVYFDRQQDRNSDKEVFGAKIIPSRGAWLEFEIDKKDQPQVRVDRKRKQSAIVFLMAIGM
TKQEIREAFQDYPLVLDALDNTKLQTQDEALKDMYSKIRPADTATPEAGKNLLDSFYFNT
KRYDLARVGRYKINRKLGLETDMNDRSLSREDIIATIKYLVTLHDGKATFPGKRNGEDVE
LRVDVDDIDHFGNRRIRQVGELIQNQLRTGLSRMERVVRERMTTQDAEAITPQSLINIRP
VNATIKEFFGTSQLSQFMDQNNPLSGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFGR
MCPIESPEGPNIGLIGSLATFGRVNPFGFIETPYRKVVNGHVTDEVEYMTADRDLDHVIA
QANQELDENNNFVHSDALARVGEEEAVDVPVSQVDYMDVSPRQMTSLGASLIPFLEHDEG
HRALMGTNMQRQAVPLIESERPLVGTGSEWRAANDSGDVIKADKDGVVTYVSADMIRVMN
DDGTTSSYKLAKFQRSNQTTCYNQRPLIHDGERVEAGSVLADGPAIQKGELALGKNLLIA
FMPWNGYNYEDAVIISQRLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAVA
NLDERGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHG
ETGTVIGIKEITREDAEEDGDELPNGVNQMIRVYIAQHRKITVGDKLSGRHGNKGCISRI
LPEEDMPFLADGTPVDIMLNPLGVPSRMNLGQVLELHLGWIAHCGWDISLDPNMEAEWKK
LIPQGAEKAEPNTPVATPVFDGVKPDVLKGLLSTTLPNRDGDRLVGPDGKATLYDGRTGE
PFFRPISVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALE
AYGAAYTLHEMMTTKSDDVDGRVRVYGAIVKGENLPPAGIPESFKVLLKEMQSLSLNVEV
LNADGVAIDMKDEDDDPAGASDDLGFNIGARPDAAAKEDQAAAEPEYQ
NT seq 3567 nt   +upstreamnt  +downstreamnt
ttggctacgactacagctaagacgaacaccaataccaatattgcgcgcgccgaccagcat
gacatcgacctgcacaaggcgtcggaccgcgtgaacttcggctccatcaaggagccgatc
gatgtgccctacctgctgggcgtgcagaccgacagcttcgattggctgatcggtgccgac
cgctggaagaagcgcgtggaagaggacgagaagaacggcaccatcaccacgccgcacgtc
tccggccttgacgaggttttcaacgagatttccccgatcgagaacttcgcccagaccatg
agcctgaccttctccgacccgtacttcgaagaaccgcgccacaccgtgcaggaatgcaag
gagaaggactacacctactccgcaccgctgtacgtcaacgcagaattcgaaaacggcgaa
accggcgaaatcaagtcccagaccgtgttcatgggcgatttcccgctgcagactccgcat
ggcaccttcatcatcggcggcaccgagcgagtgatcgtgtcccagctggtgcgttccccc
ggcgtgtacttcgaccgtcagcaggatcgcaactccgacaaggaagtcttcggcgcgaag
atcatcccgagccgtggcgcatggcttgagttcgaaatcgacaagaaggaccagccgcag
gttcgcgtggatcgcaagcgcaagcagtccgccatcgtcttcctcatggccatcggcatg
accaagcaggagatccgcgaggccttccaggactacccgctggtgctcgacgctctggac
aacaccaagctgcagacccaggacgaagccctcaaggacatgtacagcaagattcgcccg
gccgacaccgccactccggaagccggcaagaacctgctcgactccttctacttcaacacc
aagcgctacgatctggcccgcgtcggccgctacaagatcaaccgcaagcttggtcttgaa
accgacatgaacgaccgttccctgtcgcgcgaagacatcatcgccaccatcaagtacctc
gtcaccctgcacgacggcaaggccaccttcccgggcaagcgcaacggcgaggacgtggag
ctgcgcgtcgacgtggacgatatcgaccacttcggcaaccgtcgtatccgccaggtcggc
gaactgatccagaaccagctgcgcaccggcctgagccgtatggagcgcgtggtgcgcgag
cgtatgaccactcaggacgccgaggccatcaccccgcagtccctgatcaacatccgcccg
gtgaacgccaccatcaaggagttcttcggcacctcccagctgtcccagttcatggaccag
aacaacccgctgtccggtgtgaccaacaagcgtcgtctgtccgcactgggccccggcggc
ctgtcccgcgatcgcgcctccatggaagtgcgagacgtgcacccgtcccacttcggccgt
atgtgcccgatcgaatcccctgaaggcccgaacattggtctgatcggttcgctggcaacc
ttcggccgcgtcaacccgttcggcttcatcgagaccccgtaccgcaaggtcgtcaacggc
catgtgaccgacgaggtcgagtacatgaccgccgaccgcgatctcgaccacgtgatcgcc
caggccaaccaggagctcgacgagaacaacaacttcgtccacagcgacgcccttgcccga
gtcggcgaggaagaagcggtcgatgtgcccgtcagccaggtcgactacatggacgtttcc
ccgcgtcagatgacctcgctgggcgcctccctgatcccgttcctggagcatgatgagggc
caccgagcactgatgggtaccaacatgcagcgtcaggccgtgccgctgatcgaatccgag
cgcccgctggtgggcaccggctccgaatggcgcgccgccaacgattccggcgacgtgatc
aaggccgacaaggacggcgtggtcacctacgtgtccgccgacatgatccgcgtgatgaac
gacgatggcaccaccagctcctacaagctggccaagttccagcgttccaaccagaccacc
tgctacaaccagcgtccgctgatccacgacggtgagcgcgtcgaagccggttccgtactg
gccgacggccccgccatccagaagggcgagctggcactgggcaagaacctgctcatcgcc
ttcatgccgtggaacggctacaactacgaggatgctgtgatcatctcccagcgcctcgtg
caggacgacaccctgagctccatccacatcgaggagtacgagatcgacgcccgcgaaacc
aagctgggcgccgaagagatcacccgagacctgccgaacgtcggcgaggatgcggtggcc
aacctcgacgagcgcggcatcatccgcatcggcgccgaggtcgaagccggcgacatcctg
gtcggtaaggtcaccccgaagggcgagaccgagctcaccccggaagagcgcctgctgcgc
gccatcttcggtgagaagagccgcgaagtgcgcgacacctcgctgcgcgtgccccacggc
gagaccggtaccgtcatcggcatcaaggagatcacccgcgaggatgccgaggaggacggc
gacgagctgcccaacggcgtcaaccagatgatccgcgtctacatcgcccagcaccgtaag
atcacggtcggcgataagctctccggccgccacggcaacaagggctgcatctcccgcatc
ctgccggaagaggacatgccgttcctggcggacggtaccccggtcgacatcatgctgaac
ccgctgggcgtgccttctcgaatgaacctcggccaggtgctggaactgcacctcggctgg
atcgcccactgcggttgggacatctccctcgacccgaacatggaagccgaatggaagaag
ctcatcccgcagggcgccgaaaaggccgagccgaacaccccggtcgccaccccggtgttc
gacggcgtcaagccggacgtgctcaagggcctgctgtccaccaccctgccgaaccgtgac
ggcgaccgtctggtcggccccgacggcaaggccaccctgtatgacggccgcaccggcgag
ccgttcttccgcccgatctccgtcggctacatgtacatgctgaagctgcaccacctggtc
gacgacaagatccacgcacgttccaccggcccgtactccatgatcacccagcagccgctg
ggcggtaaggcgcagttcggtggccagcgcttcggcgagatggaagtgtgggccctcgag
gcctacggtgccgcctacacgctgcacgagatgatgaccaccaagtccgatgacgtcgac
ggccgcgtgcgcgtctacggtgccatcgttaagggcgagaacctgccgcctgcaggcatc
ccggaatccttcaaggtgctcctgaaggaaatgcagtccctgtccctgaacgtcgaggtg
ctcaacgcggacggcgttgccatcgatatgaaggacgaggacgacgacccggccggcgca
tccgacgatcttggcttcaacatcggcgcccgccccgacgcggccgccaaggaagaccag
gctgccgccgagcccgaatatcagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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