KEGG T01321: BAMF

Bacillus amyloliquefaciens DSM 7: BAMF_1421

Entry

BAMF_1421 CDS T01321

Gene name

ykoU

Definition

ATP-dependent DNA ligase subunit

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

bao Bacillus amyloliquefaciens DSM 7

Pathway

bao03410	Base excision repair
bao03420	Nucleotide excision repair
bao03430	Mismatch repair
bao03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:bao03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:bao03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:bao03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:bao03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M

Other DBs

NCBI-GI:

308173312

NCBI-GeneID:

9780974

UniProt:

E1USF9

Position

complement(1421079..1422914)

AA seq 611 aa
MVLTMQPILTSAPPTGSEWRYEVKYDGFRCLLRIDESGVTLTSRNGQTLTNQFPEITAFA
VLCFQHMKDRFPITLDGELVYLVNPYRADFEHIQIRGRLKRAEAIENIANKRPCRFLAFD
LLVLKGAATVSLPYVKRKHALFKLFEEANLPLSPRHLAEEAIQYIPEHTDFEALWDKVVR
YDGEGIVAKRVSSGWAENKRSPDWQKYKHMKTAHVLLTGFNPKNGYVTASVLKDGTAVPV
ASVSHGMQAEEKNAVRTIMETHGKKLKNGEYSLEPSICMTVQYLTILQDTLREVSFVSFQ
FGMDWTECTYQQLILRSKTLPPELQFTSLDKVVFKKREKTKEDFLCYMVKMSDVLLPFLK
DRAVTVIRYPHGAPGESFFQKNKPDYTPDFVSSVFDGSHEHIVCNSIPSLLWLANQLALE
FHVPFQTVHSKRPAEIVIDLDPPSRNDFPMAVEAAHVLKELFDSFSITSFPKLSGNKGIQ
LYIPLSPEAFTYEETRAFTMLIADYCVRTRPDLFTTERFIKNRNGRLYLDYLQHAEGKTI
IAPYSTRGNELGTVAAPLYWNEVNSSLTPDDYTIDTVVNRVRTEGDPFYEFYRNPQDGPL
SIVLEQIKRKS

NT seq 1836 nt +upstreamnt +downstreamnt
atggtgctgacgatgcagccgattctgacctctgcaccgcccacaggcagtgagtggcgc
tatgaggtaaagtatgacggattccgctgtcttctccgcatagacgaaagcggtgtcaca
ttaaccagcagaaacggccagacgctgacgaatcaatttccggaaatcacagcctttgcc
gtcctgtgttttcagcacatgaaagacaggttccccattacgcttgacggtgagcttgtt
tatttagtgaatccgtacagagcggactttgagcacattcaaatccgcggacgtttaaaa
cgggcggaagccattgaaaatatcgccaataaacggccgtgccgctttctggcatttgat
ctcttggttctgaaaggcgccgcgacagtctcattgccctatgtgaaacggaagcacgcc
cttttcaaactgtttgaagaagcaaatcttcctttaagcccccgtcacttagcggaagaa
gcgattcaatacattccggagcacactgactttgaagcgctctgggacaaggtcgtccgg
tatgacggagaaggcatagtagcaaaaagggtatcgagcggctgggcggaaaataaacgg
tctcccgactggcagaagtacaaacatatgaaaacggcacatgtgctgttaaccggattc
aatccgaaaaacgggtatgtgacggcctcggttttaaaagacggcaccgccgttcctgtc
gcatccgtttcccacggcatgcaggctgaggaaaaaaacgccgtcagaaccattatggag
acccacggaaaaaaactgaaaaacggcgagtattcactagagccctccatctgcatgacc
gtgcaatatttaaccatattgcaggacaccctgcgcgaagtatcttttgtttcctttcag
tttgggatggattggactgaatgcacttatcagcagctaatcctccgatctaaaacgctg
ccaccagagctgcagttcacaagcctggataaggtcgtttttaagaagcgtgaaaaaacg
aaagaagatttcctttgttatatggtgaagatgagcgatgttcttttgccctttcttaaa
gaccgggctgtcacagtaatccgatatccacacggggcgccgggcgagtctttttttcaa
aaaaacaagccggactacacgccggactttgtctcaagcgtgtttgacggaagccatgag
cacatcgtgtgcaacagcataccgtctcttttatggctggccaatcagctggcgctggaa
tttcacgttccttttcagacagtccattctaaaaggcccgcagaaatcgtcattgacctt
gatccgccgtcaaggaatgatttccctatggctgtggaggcggcgcatgtgctgaaagag
ctgtttgactcattcagcattacatcatttccgaagctttccggaaataaaggcattcag
ctctacatcccgctttcaccggaagcattcacctacgaagagacccgcgcgttcacaatg
ctcattgctgattattgcgtccggacgcgcccggatctatttacgacagagcggtttatc
aaaaaccgaaacggcaggctctaccttgattatttgcagcatgctgaaggaaaaacgatt
atcgccccctattcgacccggggcaacgaattgggaacggttgccgcccccctttattgg
aacgaagtcaattcctctttaacacctgatgattatacgattgatacagtcgtgaatcgc
gtcagaacagagggagatccgttttatgagttttaccgcaatccgcaggacggcccgctt
tcaatcgtgcttgagcaaatcaagagaaagagctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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