KEGG   Bacillus amyloliquefaciens DSM 7: BAMF_1730
Entry
BAMF_1730         CDS       T01321                                 
Symbol
polC
Name
(GenBank) DNA polymerase III (alpha subunit)
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
bao  Bacillus amyloliquefaciens DSM 7
Pathway
bao03030  DNA replication
bao03430  Mismatch repair
bao03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bao00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BAMF_1730 (polC)
   03430 Mismatch repair
    BAMF_1730 (polC)
   03440 Homologous recombination
    BAMF_1730 (polC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bao03032]
    BAMF_1730 (polC)
   03400 DNA repair and recombination proteins [BR:bao03400]
    BAMF_1730 (polC)
Enzymes [BR:bao01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BAMF_1730 (polC)
DNA replication proteins [BR:bao03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     BAMF_1730 (polC)
DNA repair and recombination proteins [BR:bao03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     BAMF_1730 (polC)
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_a_NII DNA_pol3_finger DNA_pol3_a_NI HHH_6 tRNA_anti-codon HHH_3 DEDDh_C RNase_H_2 Zn-ribbon_8
Other DBs
NCBI-ProteinID: CBI42856
UniProt: A0A9P1JGX3
Position
1728311..1732624
AA seq 1437 aa
MEQLSVNRRQFQILLQQLNMTDDTFMTYFEDGEIDKLTIHKAEKAWHFQFRFKALLPYQI
YDSFMMRLTQSFAHIARVTSSIQVIDPSVSEELVQDYWTRCIEELEGTSPPMVALLNQQK
PKLKGNKLIVKTKTDTEASALKNKYSALIQHSYRQFGFPELQLDTEIFVSDQEVQKFREQ
KLAEDQERAMQALIEMEKKEKEGDEDQTPSGPLVIGYQIKENEEIRTLDSIMDEERRITV
QGYVFDAETRELKSGRTLCIFKITDYTNSILVKMFAREKEDAALMKTLKKGMWVKARGSI
QNDTFVRDLVMIANDVNEIKAKTREDTAPEGEKRVELHLHSPMSQMDAVTGIGKLVEQAK
KWGHEAIALTDHAVVQSFPDAYSAAKKHGIKMIYGMEANIVDDGVPIAYNPAHRLLEEDT
YVVFDVETTGLSAVYDTIIELAAVKIRGGEIIDKFEAFANPHHPLSATTIELTGITDDMV
RDAPDVVDVVRDFKEWIGDDVLVAHNASFDMGFLNVAYKRLLKTEKAKNPVIDTLELARF
LYPEFKNHRLNTLCKKFDIELTQHHRAVFDAEATGYLLLKMLKDAAEKDIFYHDQLNENM
GQSNAYQRSRPYHATLLAVNETGLKNLFKLVSISHIQYFYRVPRIPRSQLDKYREGLLIG
SACDRGEVFEGMMQKSPEEVEDIASFYDYLEVQPPEVYRHLLQLELVRDEKALKEIITNI
TKLGEKLNKPVVATGNVHYLNDEDKIYRKILVSSQGGANPLNRHELPKVHFRTTDEMLDA
FSFLGAEKAKEIVVENTQKVASMIEEIKPIKDDLYTPKIDGADEEIREMSYQRARSIYGE
ELPEIVEARIEKELKSIIGHGFAVIYLISHKLVKRSLDDGYLVGSRGSVGSSLVATLTEI
TEVNPLAPHYVCPSCRYSEFFNDGSVGSGFDLPDKSCPSCGTPLKKDGHDIPFETFLGFK
GDKVPDIDLNFSGEYQPHAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYVKGYAGDHNLH
MRGAEIDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFSPIQFPADATGSEWKTTHFDF
HSIHDNLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFQGTESLGVTEEQIG
CKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTDVWLGNAQELIHNNTCELS
EVIGCRDDIMVYLIYQGLEPSLAFKIMEFVRKGKGLTPEWEEEMKKNNVPNWYIDSCKKI
KYMFPKAHAAAYVLMAVRIAYFKVHHALLYYAAYFTVRADDFDIDTMIKGSTAIRAVMDD
ISSKGLDASPKEKNLLTVLELALEMCERGYSFQKVDLYRSSASEFIIDGNSLIPPFNSIP
GLGTNAALNIVKAREEGEFLSKEDLQKRGKVSKTILEYLDRHGCLESLPDQNQLSLF
NT seq 4314 nt   +upstreamnt  +downstreamnt
atggaacagttatcagtaaacagaagacagtttcagattcttctgcagcagcttaatatg
acagatgataccttcatgacatactttgaagatggagagattgataaactgacaatccat
aaagcagaaaaggcctggcatttccaatttcgcttcaaggctcttttgccgtatcaaata
tatgattcattcatgatgaggttaacacaatcgtttgctcacatcgcccgtgtcacatca
tccattcaagtcattgaccctagcgtgtcagaggagcttgtacaggattattggacgcgc
tgtatcgaagagcttgaaggaacctcgccgccgatggtggcccttttgaatcagcagaag
ccgaagctcaagggaaacaagctgatcgtgaaaacaaagacggatacagaagcatcggcg
ctcaaaaataaatacagcgcactgattcagcacagctatcgccaattcggctttcctgaa
ctgcagctggataccgaaattttcgtgtctgaccaagaagttcagaaattccgcgagcaa
aagcttgctgaagatcaggagcgggcgatgcaggcgcttatcgaaatggagaagaaggaa
aaagagggcgatgaggatcagacgccatccggaccgcttgtcatcggctatcaaattaaa
gagaacgaagaaatccggacgcttgacagcatcatggatgaagaaagaagaatcacggtg
cagggctatgtgtttgatgctgaaacacgcgagctgaaaagcggacggacgctctgtatt
ttcaaaattacggattatacaaacagtattctagtgaaaatgtttgcaagagaaaaagaa
gacgccgccctcatgaaaacactgaaaaaaggcatgtgggtgaaagcgcggggaagcatc
caaaacgatacattcgtcagagacctcgtcatgattgcaaatgacgtgaatgaaataaaa
gccaaaacccgggaagacaccgctcctgaaggcgaaaaacgggtagagcttcatctgcat
tctccgatgagccaaatggacgccgtaacgggcatcggaaagcttgtcgaacaggcgaaa
aaatggggacacgaagcgattgcgttaactgatcatgccgtcgtgcagtccttcccggat
gcatattccgccgcgaaaaagcacggtattaaaatgatttacggaatggaagccaatatc
gtagatgacggcgttccgatcgcatacaatcccgctcaccgtcttctggaagaagacaca
tatgtcgtctttgacgttgaaacgacgggtctgtcagcagtgtatgacaccatcattgag
cttgcggcagtcaaaataagaggcggagaaatcattgataaattcgaagcgttcgccaat
ccgcaccaccctctgtcagcaacgacgatagagctcaccggaattacggatgacatggtc
cgcgacgcgcccgatgtcgttgacgttgtcagggattttaaagaatggatcggcgatgat
gtgctagtggctcacaacgccagctttgatatgggatttttaaatgtagcgtataagcgc
cttttgaaaaccgaaaaagcgaaaaatccggtcattgatacgctggaactcgcgcgtttc
ctgtatcctgaatttaaaaatcaccgcttaaatacgttatgtaagaagtttgatatcgaa
ttaacccagcaccaccgagcggtctttgacgctgaagcaacaggatatctgctgttaaaa
atgctcaaagacgcggctgaaaaagatattttttatcatgatcagctgaatgagaatatg
ggacaatccaatgcttaccaaagatcaaggccttatcacgctacattgcttgccgtgaat
gagaccggcttgaaaaatctgtttaagctcgtgtccatttctcatattcaatatttctac
agagtgccgcgcattccaaggtcgcagcttgataaatacagagaaggcctgttaatcggt
tctgcctgtgacaggggagaggtctttgaaggcatgatgcaaaaatcacctgaagaggtt
gaagatatcgcatctttctatgactatcttgaagtgcagccgccggaagtatacaggcac
cttctgcagcttgagctcgtccgggatgaaaaagcgctgaaagaaattatcacaaacatt
acgaagctcggggaaaaactgaataagccggtcgttgcgacaggaaatgtccactattta
aacgatgaggataaaatttaccggaagatcttagtttcttctcaaggcggcgccaacccg
ttaaacagacatgaactgcctaaagtgcatttcagaacgacagatgaaatgctggatgct
ttctcctttctgggtgcggaaaaagcgaaagaaatcgtggttgagaatacacaaaaagtc
gcttccatgatcgaagagatcaaaccgattaaagacgacctgtacacgccgaaaattgac
ggagccgatgaagaaatccgtgaaatgagctatcagcgcgccagaagcatttacggtgaa
gagcttcctgaaattgttgaagcgagaatagagaaagaattaaaaagcatcatcggccat
ggattcgccgttatatatctcatttctcataagcttgtaaaacggtctctggatgacggc
tatctcgtcggctcccggggatccgtcggttcatcacttgtggcgactttaacggaaatc
actgaagtgaacccgctcgctccgcactatgtgtgcccgagctgccggtattccgaattc
tttaatgacggatccgtcggttccggttttgaccttccggataaaagctgcccgtcttgc
ggcactcctttgaaaaaggacggacacgatatcccgtttgaaacgttcttaggcttcaaa
ggcgataaagtacccgatatcgacttgaacttctcaggtgagtatcagccgcatgcgcat
aactacacgaaagtgctgttcggtgaagataatgtttaccgtgcgggaacgatcggcacc
gttgcggaaaagacggcttacggatatgtgaaaggctatgcgggcgaccacaaccttcac
atgcgcggcgctgaaatcgaccgcctcgtacagggctgcaccggtgttaagagaacgacc
ggccagcacccggggggcattatcgttgtgcctgattatatggatatttacgatttttca
ccgattcaattcccggctgatgcgacgggttctgaatggaaaacaactcactttgacttc
cactccattcatgacaacctgctgaagcttgatatattaggacacgatgatccgacagtc
atccggatgctccaggatttaagcggaattgatccgaagacgattccgacggatgatcct
gaggttatgaagattttccaagggacagaatcactcggcgtcactgaagagcagatcggc
tgcaaaacggggacgctcggcattcctgaattcgggacgcgatttgtgcggcagatgctc
gaagatacgaagccgacgacgttctctgagcttgttcagatttccgggctttctcacggg
actgacgtatggctcggcaatgcgcaggaactgatacacaacaatacgtgtgaactgagc
gaagtgatcggctgccgcgatgacatcatggtttatttgatctatcagggccttgagcct
tcactggcctttaaaatcatggaatttgtccgtaaaggcaaaggcctgacgccggaatgg
gaagaagaaatgaaaaagaacaatgtgccgaactggtatattgattcatgcaaaaaaatc
aaatacatgttcccgaaagcccacgccgccgcatatgtgttaatggcggtacggattgca
tactttaaagtgcatcacgcgcttttatactatgctgcgtattttaccgtacgtgccgat
gactttgacattgatacgatgattaaaggctcgactgccatcagggcggttatggatgat
atcagctctaaagggcttgatgcttcgccgaaggaaaaaaacctccttaccgtgttagag
cttgcgcttgaaatgtgtgaacgcggctattccttccagaaggtcgatctataccgttca
agcgcttcggaatttatcattgacggcaacagtctgatcccgccgttcaactcaattccg
ggtctcggaaccaacgccgctctcaatattgtaaaagcgcgggaagaaggagagttcctt
tcaaaagaagaccttcaaaaacgcggaaaagtgtcaaaaaccattttagagtatttagac
cgccacggctgtctggagtcgcttccggaccaaaaccagctgtcactgttttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (25)   

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