KEGG T03021: BUMPG002

Buchnera aphidicola G002 (Myzus persicae): BUMPG002_CDS00250

Entry

BUMPG002_CDS00250 CDS       T03021

Symbol

rne

Name

(GenBank) Rne

K08300

ribonuclease E [EC:3.1.26.12]

Organism

bapg Buchnera aphidicola G002 (Myzus persicae)

Pathway

bapg03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:bapg00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BUMPG002_CDS00250 (rne)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bapg03019]
    BUMPG002_CDS00250 (rne)
   03009 Ribosome biogenesis [BR:bapg03009]
    BUMPG002_CDS00250 (rne)
Enzymes [BR:bapg01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     BUMPG002_CDS00250 (rne)
Messenger RNA biogenesis [BR:bapg03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BUMPG002_CDS00250 (rne)
Ribosome biogenesis [BR:bapg03009]
Prokaryotic type
  rRNA processing factors
   BUMPG002_CDS00250 (rne)

SSDB

Motif

Pfam:

RNase_E_G RNase_E_G_Thio S1

Other DBs

NCBI-ProteinID:

AHG61192

Position

complement(381539..384328)

AA seq 929 aa
MYLLIYKNKREKVTMKRMLINATQQEELRVALVDGQRLYDLDIENSGSEQKKSNIYKGKI
ARIEPSLEAAFVDYGEEKHGFLPLREISKNYFPKKYIYNSRVNIKDILQEGQEVIIQINR
EERGTKGAALTTFISLAGSYLVLMPNNPKAGGISRRIEGSDRTLLKELLTSLKLPEDMSV
IIRTAGAGKSIESLKWDLSLRLQHWETIQIIAQQRTAPFLIHQESNVIVRAFRDYLRQDI
GEILIDNPLMLDFAREHITFLGRPDFINKIKLYTGAIPLFRHFQIETQIDSAFQRQVRLP
SGGSIMVDSTEALTAIDINSARSTSGIDIESTAFNTNLEAVDEISRQLRLRDLGGLIVID
FIDMTPVSHQRAIENRLREIAREDRAKIQIGQISKFGLLEMSRQRLSSSLGESNYHICPR
CTGTGTIRDNESLSLSILRLIEEEALKENTYEVHAIVPIEIACYLLNEKRDAVHAIEKRQ
RGGKTIIVPSKNMKTPHYSVSRIRKGENINSMSYYLSDTKKRKFSHTLKENVIQKKQKEK
LVLKNFILTNNKINKTKKEKENILKKNKINSKFYKILLNNNFILKIITWLKRSVLMRYIL
TTSEFIKNHTYQNKNNIYIKKKYHSLNKNNKSSYSDREKKDNKFNVNSKNIQNSFSKDSD
IKVFKNDCFTFSQIYNNYMKKNQFYFISEYNFFYNIENKKNISQKTVINNLNKNKIIEHD
NIVYPVFTASKILKKRSIKNNHLNFYPLVCPVSIKSSVFSLELAFSKVWIKYSIISLDGI
KKNKKNILKKKINSFSIFEKNNLVSYPILSEKKLKKKEIKNDYDQIKKITSELDSLKKYS
KFKKQIKKNIKCKYILIPKKKNTFIFNKKNQSSAPITKISTELYLKEKKKVINSNLFLRE
SNIKIKNSAGAHSAKNFSNSPVFKPKKKI

NT seq 2790 nt +upstreamnt +downstreamnt
atgtatttacttatttataaaaataagagagaaaaagttacaatgaaaagaatgttaatt
aatgccactcagcaggaagagttgcgtgtagcacttgttgatggtcagcgtttatatgat
cttgatatagaaaattctggatcagaacaaaaaaaatcaaatatatataaaggaaagatt
gctcgaattgaacctagtttagaagctgcttttgtagattatggtgaagaaaaacatggt
tttttaccattacgagaaatttctaaaaattattttccgaaaaaatatatttataattca
cgtgtaaatataaaagatattttgcaagaaggtcaagaagttattattcaaataaataga
gaagaacgcggtactaaaggagcagctttaacgacttttatcagtttggcaggtagttat
ttagtacttatgccaaataatccgaaagctggtggaatatcaagaagaattgaaggaagt
gatagaactcttttaaaagagttattaacttcattaaaattacctgaagatatgagtgtc
ataattcggactgcaggtgccggaaaatcgatagaatcattaaaatgggatttatcactt
agattacagcattgggagacgattcaaataatagcacaacaacgaacagcaccatttttg
attcatcaagaaagtaatgtaattgtacgtgcttttagagattatttacggcaagacatt
ggagagattttaattgataatcctttaatgctagatttcgcacgagaacatattactttt
ttaggccggccagattttattaataagatcaaactatatactggagcaattccactgttc
agacattttcagattgaaacacagatagattctgcttttcaaagacaagtaagattgcct
tcaggtggatcaattatggtagatagtactgaagcattaactgctattgatattaattct
gctcgctctacaagtggtatagatattgagtctacagcatttaatactaatcttgaagca
gtagatgaaatttctcgtcaattacgtttaagagatttagggggtttaattgttattgat
tttatagatatgactccggttagtcatcagagagctattgaaaatagattacgtgagatt
gcacgggaagatagagcaaagattcaaattggtcagatttctaaatttggtttgttggaa
atgtcgagacaacgattaagttcttctttaggtgaatctaattatcatatttgtcctaga
tgtacaggaactggaactattagagataatgaatctttatcattatctattttacgttta
attgaagaagaagctctgaaagagaatacatatgaagtgcatgctattgtacctatagaa
atagcctgttatttattaaatgaaaaaagagatgcagtacatgctattgaaaaacgtcaa
cgtggtggaaaaactatcattgttccgagtaaaaatatgaaaactccacattattctgtt
tctagaataagaaaaggtgaaaatatcaattcaatgagttattatctttctgatactaaa
aaaagaaaattttctcatacattgaaagaaaacgttattcaaaaaaaacaaaaagaaaaa
ttagttttgaaaaattttattttaacgaataataaaattaataaaacaaaaaaagaaaaa
gaaaatattttaaaaaaaaataagattaatagtaaattttataagattttattaaataat
aattttattttaaaaataataacttggttaaaacgttctgttttaatgagatatatttta
acaacaagtgaattcattaagaatcatacttatcagaataaaaacaacatatatataaaa
aaaaaatatcattctctaaataaaaataataaatcttcttatagtgatagagagaaaaaa
gacaataaattcaatgttaatagtaaaaatattcaaaattcattttcaaaagattcagat
attaaagtatttaaaaatgattgttttactttcagtcagatttataataattatatgaaa
aaaaatcaattttattttataagtgaatataattttttttataatatagaaaataaaaaa
aatatatcccaaaagactgttataaataatttaaataagaataaaatcatagaacatgat
aatattgtttatccagtttttactgcttctaaaatattaaaaaaaaggagtattaagaat
aatcatttaaatttttatccactcgtatgtcctgtttcaattaaatcttcagttttttca
ttagaattagcttttagtaaagtttggattaaatattcaattatttcattagatggaata
aaaaaaaacaaaaaaaacatattgaaaaaaaaaataaattcattttctatttttgaaaaa
aacaatttagtttcatatccaattttatcagaaaaaaagttaaaaaagaaagaaattaag
aatgattatgatcaaataaaaaaaataacaagcgaactcgattcattgaaaaaatattca
aaatttaaaaaacaaattaaaaaaaacataaaatgtaaatatatactaattcctaaaaag
aaaaatacatttatttttaataaaaaaaatcaatctagtgctcccattactaagatctct
acagaactatatttaaaagaaaaaaagaaagtcataaattctaatttatttttaagagaa
tcaaatattaaaataaaaaattcagcaggagcacactctgcaaaaaatttttctaattct
cctgtttttaaacctaaaaaaaaaatttaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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