KEGG   Buchnera aphidicola Sg (Schizaphis graminum): BUsg_034
Entry
BUsg_034          CDS       T00087                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
bas  Buchnera aphidicola Sg (Schizaphis graminum)
Pathway
bas03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bas00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BUsg_034 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bas03021]
    BUsg_034 (rpoC)
   03400 DNA repair and recombination proteins [BR:bas03400]
    BUsg_034 (rpoC)
Enzymes [BR:bas01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BUsg_034 (rpoC)
Transcription machinery [BR:bas03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BUsg_034 (rpoC)
DNA repair and recombination proteins [BR:bas03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BUsg_034 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AAM67605
UniProt: P41185
Position
complement(36463..40704)
AA seq 1413 aa
MKDLLKFLKAQTKNEDFDAIKISLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQSKVRRERMGHIELSSPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIETGMTNLEKRQILTEEQYLDALEEFGDEFYATM
GAEAIQSLLKDINLVKECENLRIELNETNSETKRKKLTKRIKLLESFIQSNNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAIDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLEVRGLATTIKAAKKMVEREEAIVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREKINGKGEGMILNGSNEAEKVYRLE
IAELHSLVKVRITEYKKNKDQSFIPKTKIINTTIGRAILWMIVPKGLPFSIVNQTLGKKD
ISKMLNTCYRILGLKPTVAFADQIMYTGFAYAARSGASVGIDDMVIPVKKLNIIHEAEIE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTESVFNKKGEKQKQISFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTQNDCGTHEGILMTPLIEGGDVKEPLRERVL
GRVTAEKILIPNTENILIERNTLLNEQWCDLLEKNSIDNVKVRSVVNCETDFGVCAYCYG
RDLARGNLVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAATESSIQIKNKGIINL
NNAKSVTNSSGKIVITSRNVELNIIDNFRRTKETYKVPYGAIMAKGHGEQVNSGETVAKW
DPHTIPVITEVSGFVRFVDMIDGQSITRQADELTGLSSIVVLDTAERMTIGKDLRPSLKI
VDRDGNDVLISGTEMPAQYFLPGKAIVQLDDRVQISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKELAILAEISGIISFGKETKGKRRLIITPVDGSDAYEEMIPKWRQLNVFE
GERVERGDVISDGPESPHDILRLRGVQAVTKYIVNEVQEVYRLQGVKINDKHIEVIIRQM
LRKATVIKSGNSEFLDGEQVEFSRIKISNRILNKQSKIPATFSRDLLGITKASLATESFI
SAASFQETTRVLTESAVAGKKDELRGLKENVIVGRLIPAGTGYAYHKERLNRRHTVNTNQ
IKPNNSSSQISAEEASASLSELLNSTLIQHDHT
NT seq 4242 nt   +upstreamnt  +downstreamnt
gtgaaagatttactaaaatttttaaaagcccaaactaaaaatgaggattttgatgctatt
aaaatttctctagcatcacctgatatgattagatcttggtcatttggtgaagttaaaaaa
ccagaaactattaattatcgtacatttaaacctgaacgagacggactattttgtgcacgt
atttttggtccagtaaaagattatgaatgtttatgcggaaaatataaaagattaaaacat
cgaggtgttatttgtgaaaaatgcggtgttgaagtaacacaaagtaaagttagacgtgaa
cgaatgggtcatatagaactttcttctcctacagctcatatttggtttttaaaatcatta
ccatcacgtataggtttattattagacatgcctttaagagatattgaaagagtactatat
tttgaatcttatgttgttattgaaacaggtatgacaaatcttgaaaaacgtcaaatttta
actgaagaacaatatctagatgcattagaagaatttggagacgaattttatgcaacaatg
ggagcagaagcaattcaatctttattaaaagatataaatttagtaaaagaatgtgaaaac
ttaagaatagaacttaatgagacgaattcggaaacaaagcgaaaaaaattaactaaaaga
attaaattattagaatcttttatacaatctaataataaaccagaatggatgattttaact
gttttaccagtattgccacctgatctaagaccattagtaccattagatggaggaagattt
gcaacatctgatctaaacgatttatatcgtcgcgtcattaacagaaacaatagattaaaa
agattattagatttagcagcacctgatatcattgttagaaatgaaaaaagaatgttacaa
gaagcaatagatgctttactagataatggtagaagaggaagagccattactggttcaaat
aaaagacctcttaaatcattagcagatatgattaaaggaaaacaaggtagattccgacaa
aatcttcttggaaaacgcgttgattattccggacgatcagttattactgtaggaccttat
cttcgtttacatcaatgtggcttacctaaaaaaatggcattagaactttttaaaccattt
atatatggaaaattagaagttcgtggattggcaactaccataaaagccgcaaaaaaaatg
gttgaaagagaagaagcaatagtatgggatatattagacgaagttattcgagaacatcct
gttcttttgaatcgtgcacctactttacatagattaggaatacaagcatttgaacccgtt
ttaatagaaggtaaagctattcaattacatccattagtttgtgcggcttataatgctgat
tttgatggagatcagatggctgttcatgttccattaactctagaagctcaattagaagct
agagctttaatgatgtctacaaataatatactttctccagctaatggtgaaccaattatc
gtaccatctcaagatgtagtcttagggctttattatatgactcgcgaaaaaataaatgga
aagggagagggaatgattttaaacggttctaatgaagcagaaaaagtatatcgtttagaa
attgcagagttacattctctagttaaggtacgcataacagaatacaaaaaaaataaagat
caaagttttattcctaaaacaaagataataaacactacaataggacgagctattttatgg
atgattgttcctaaaggattgccatttagtattgttaatcaaactttaggaaaaaaagac
atttctaaaatgttaaatacttgctatcgtattttaggtttaaaacctactgttgctttt
gccgatcagatcatgtatacaggttttgcttatgcagcaagatctggagcttcggttggt
attgacgacatggtcatacctgtaaaaaaattaaatattattcatgaagcagaaatagaa
gtagctgaaatacaagaacagtttcaatctggattagttacggcaggtgaaagatataac
aaagtcattgatatttgggcagcagctaacgaaagagtagctaaagcaatgatggaaaac
ttatctacagaatctgtatttaataaaaaaggcgagaaacagaaacaaatctcttttaat
agtatatttatgatggccgattcgggtgctcgcgggtctgctgcacaaattcgtcaatta
gcaggaatgagaggactgatggcaaaaccagatggatcaattattgaaacgcctataaca
gctaattttagagaaggtctaaacgtattacaatattttatttcaactcatggagcacga
aagggtttagctgatacagcattaaaaacagctaattctggttatttgacacgccgttta
gtagatgttgcacaagatttagttgtaacacaaaatgattgcggaacacatgaaggaatt
ttaatgactcctttaatagaaggaggagatgtcaaagaaccattacgtgaacgtgtttta
ggtcgtgtcacagcagaaaaaatattaattcccaatactgaaaatatattaattgaaaga
aatactttattaaacgagcaatggtgtgatcttttagaaaaaaattctatagataatgtg
aaagtaagatcagtagtaaattgtgaaactgattttggtgtttgtgcttactgttatggt
cgtgatttagcaagaggtaacttagttaataaaggagaagcaataggagtaatagcagca
caatctataggagaaccaggtacgcaattaactatgcgaacttttcatattggtggtgca
gcatcaagggcagctactgaatctagtattcaaataaaaaataaaggcataatcaatctt
aataacgcaaagtctgttactaattcttcaggtaagatagttataacttcaagaaatgta
gaacttaatataattgataattttagaagaacaaaagaaacttataaagttccttatgga
gctattatggctaaaggccatggagagcaagttaattctggagaaacagtagcaaaatgg
gatcctcataccatacctgttattactgaagtgagcggatttgttcgatttgtagatatg
atagacggtcaaagtattacaagacaagccgatgaactaactggattatcttctatagtt
gtactagatacagcagaaagaatgacaattggaaaagatttaagaccttcattaaaaatt
gttgatcgtgatggaaatgacgttcttatttcaggaacagaaatgccagcacagtatttt
ttacctgggaaagcaattgttcaacttgatgacagagtacaaattagttctggtgacact
ttagcaagagtaccacaagaatcaggaggtactaaagatataactggtggactaccaaga
gttgcagatttatttgaagctagacgtccaaaagaattagcgattttagctgaaataagt
ggaattatatcttttggaaaagaaacaaaagggaaaagaagactaattattactccagta
gacggaagtgatgcatatgaagaaatgattccaaaatggagacaattgaatgtttttgaa
ggagaaagagttgaacgaggtgatgttatatcagatggacccgaatcaccacacgatatt
cttcgtttaagaggagtgcaggctgtaactaaatatattgtaaatgaagtacaagaagta
tatcgtttacaaggtgtaaaaattaatgataaacatattgaagtaataattagacaaatg
cttcgaaaagctactgtcattaaatcaggaaattcagaatttttagatggagaacaagta
gaattttctcgaataaaaatttcaaatcgtattttaaataaacaaagtaaaatacctgca
actttttcaagagatttattaggcattactaaagcatctcttgcaactgaatcttttata
tcagcagcttcttttcaggaaacaactagagttttaacagaatctgcagttgcaggaaaa
aaagacgaattacgaggattaaaagaaaatgttattgttggacgtttaatacctgcaggt
actggatatgcatatcataaagaacgtttaaatcgtcgtcatacagtaaataccaatcaa
ataaaacctaataactcttcttctcaaattagtgcagaagaagcatctgcaagtttatca
gaattattaaattccactcttatacaacatgatcatacataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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