KEGG T00159: Bd2252

Bdellovibrio bacteriovorus HD100: Bd2252

Entry

Bd2252 CDS T00159

Gene name

lig

Definition

hypothetical protein

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

bba Bdellovibrio bacteriovorus HD100

Pathway

bba03410	Base excision repair
bba03420	Nucleotide excision repair
bba03430	Mismatch repair
bba03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:bba03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:bba03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:bba03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:bba03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme

Other DBs

NCBI-GI:

42523710

NCBI-GeneID:

2733847

UniProt:

Q6MKX4

Position

complement(2148270..2150492)

AA seq 740 aa
MFVVQEHHASHLHYDFRLEWQGVLKSWAVPKGPSLDPHLKRLAVQVEDHPLEYGTFEGVI
PEKQYGAGPVYIWDTGTWIPKAPVAAGFKKGHLEFELKGKRLKGTWDLIRTRMQGRQVQW
LLVKREDRFARAGYEAPLIGDKSTVRRRVHTRTSFSFVQPMLALLVAEPPRGPQWWHEVK
WDGYRIQAHLQGAKVKLYTRAGHEWSGKMETVVQSLATLNVQSAVLDGEVVVLDRQGRSH
FQKLQNYFDSDPDQELTYVAFDLLMLNGEDLRDQSLKERRRKLQGILKGKHKNLRLSQQL
KLNAASWKKLRRQGLEGVISKKLDSTYISGRKGEWVKSKFLNRQEFVIGGYVPGRGSRSD
FGALLLGVYEKGQFRFVGKVGTGFSQNSITSIKKQLDRIKVAKKPFSAGDPPKSGAVWVR
PELLAEVSFASWTHGMHLRAPVFVQLRKDKPAPEVTSDALLLTNPDKVLFAAEGITKLEV
AEYYIAMVERMRPYFENRLLALVRCPDGSAGKCFFQKHLNAKADTIAVFEKDDALYVKDA
RGLLELVQMGAYEIHSRNSRAEAPGKPDQFVLDLDPGPGVAWGEVVSAALLIKKDLELLG
LRSFVKLSGGKGLHIHVPFRPGPSWEEVKRFTHSLALNWEHRFPDRFVSKMAKKIRVGRI
FIDYLRNSKGSTSVLPYSLRARDRSSVALPVAWTQLKKYKSGDAVTLKRALQILKKGRDP
WANYFARAPVLPVQKARSAS

NT seq 2223 nt +upstreamnt +downstreamnt
atgtttgtcgtgcaggaacatcatgcctctcacttgcattatgattttcggctggaatgg
cagggggttttgaaaagctgggcggttccgaaggggcccagtctggatccacacttaaaa
cgtcttgctgtgcaggtggaggatcatcctttggagtacggtacctttgaaggtgtcatt
ccggaaaagcagtacggggccggtcctgtgtatatctgggatacaggaacatggattccg
aaagctccggtcgcggcaggatttaaaaaaggtcatctggagtttgaacttaaaggcaaa
agactgaagggcacctgggatttgattcgcaccagaatgcaggggcggcaggtgcagtgg
cttttggtgaagcgggaagaccgcttcgcccgggcggggtatgaggcgccgctgatcgga
gataaatccaccgtgcggcggcgagttcacaccagaacctcattttcatttgttcagccc
atgttggcattgctggtggctgagccaccccggggaccccaatggtggcacgaggtcaag
tgggacggttatcgcattcaggcccatctgcagggggcgaaggtgaaactgtatacaagg
gccgggcatgagtggtccggtaagatggaaacagtcgttcaaagtctggccactctgaat
gttcagtccgcggtccttgatggtgaggttgtggttttggatcgccaggggcgaagtcac
tttcaaaaactgcaaaactactttgattcggatccggaccaggagctgacatatgtcgct
tttgatttgctgatgctaaacggcgaggacctgcgggatcagtcgttgaaagagcgacgg
aggaagcttcagggaattttaaaaggaaaacacaaaaatcttcgactcagtcagcagctc
aagttgaatgcagcctcgtggaaaaaactgcggcgtcaggggcttgagggagtgatttcg
aaaaagcttgatagcacctacatctccggtcgcaaaggtgagtgggtgaaaagcaagttt
ttaaaccggcaggagttcgttattggcggctatgttccaggtcgcggcagtcgcagtgat
tttggagcgttgcttttgggtgtctatgaaaaaggacagtttcgttttgtgggaaaagtg
gggacgggctttagtcagaacagtataacctcaattaaaaaacagttggatcgtatcaaa
gttgccaaaaaacctttctcggcaggagacccgccgaagtccggtgccgtatgggtgcgg
cccgagttgctggccgaggtttcctttgccagttggactcatggaatgcatttgcgggcg
ccggtgtttgtgcagcttcgcaaagacaagcccgcaccggaagtgacttcggatgccctg
ttgctgaccaatcccgacaaagtgctttttgccgcggaaggaatcaccaagcttgaggtg
gctgaatactatatcgccatggttgagcggatgcggccgtactttgaaaatcgcctgttg
gcattagtgcgctgtccggatggatctgcgggaaagtgtttttttcaaaagcatctcaac
gcgaaggctgacaccattgcggtctttgaaaaagatgatgctttgtatgtgaaagatgcc
cgcgggcttctggaactggtgcagatgggggcctacgaaattcacagtcgaaacagcaga
gcagaggctccgggaaagcctgaccagtttgtgttggatttggatccggggcctggtgtg
gcctggggtgaggtggtttcagcggccctcttgataaagaaagatctggagttgttgggg
cttcgcagctttgtgaagctgagcggaggcaaggggttgcatattcatgtcccgttccgt
ccgggcccttcgtgggaggaagtgaagcgcttcacgcacagcctggcattgaattgggag
catcgttttccggatcggtttgtcagcaagatggcaaagaagattcgtgtcggacggatt
tttattgattaccttcgcaattccaagggctcgaccagtgttttgccctattcattgcgc
gcgcgcgacagaagctcggtggctttgccggtggcttggactcagttgaaaaaatataaa
agtggcgatgcggtcaccctgaagagggcattgcagattctgaagaaggggcgggacccg
tgggcgaactatttcgcccgggccccggttctgccagtgcagaaggctagaagtgcttct
taa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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