KEGG   Bdellovibrio bacteriovorus 109J: EP01_07520
Entry
EP01_07520        CDS       T03079                                 
Name
(GenBank) hypothetical protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bbac  Bdellovibrio bacteriovorus 109J
Pathway
bbac03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bbac00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EP01_07520
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bbac03400]
    EP01_07520
Enzymes [BR:bbac01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EP01_07520
DNA repair and recombination proteins [BR:bbac03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EP01_07520
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: AHZ84787
Position
complement(1545420..1547744)
AA seq 774 aa
MPLKEYHRKRDFKKTREPPARKTKKPLKAAKEHLMFVVQEHHASHLHYDFRLEWQGVLKS
WAVPKGPSLDPHLKRLAVQVEDHPLEYGTFEGVIPEKQYGAGPVYIWDTGTWIPKAPVAA
GFKKGHLEFELKGKRLKGTWDLIRTRMQGRQVQWLLVKREDRFARAGYEAPLIGDKSTVR
RRVRTRTSFSFVQPMLALLVAEPPRGPQWWHEVKWDGYRIQAHLQGAKVKLYTRAGHEWS
GKMETVVQSLATLNVQSAVLDGEVVVLDRQGRSHFQKLQNYFDSDPDQELTYVAFDLLML
NGEDLRDQSLKERRRKLQGILKGKHKNLRLSQQLKLNAASWKKLRRQGLEGVISKKLDST
YISGRKGEWVKSKFLNRQEFVIGGYVPGRGSRSDFGALLLGVYEKGQFRFVGKVGTGFSQ
NSITSIKKQLDRIKVAKKPFSAGDPPKSGAVWVRPELLAEVSFASWTHGMHLRAPVFVQL
RKDKPAPEVTSDALLLTNPDKVLFAAEGITKLEVAEYYIAMVERMRPYFENRLLALVRCP
DGSAGKCFFQKHLNAKADTIAVFEKDDALYVKDARGLLELVQMGAYEIHSRNSRAEAPGK
PDQFVLDLDPGPGVAWGEVVSAALLIKKDLELLGLRSFVKLSGGKGLHIHVPFRPGPSWE
EVKRFTHSLALNWEHRFPDRFVSKMAKKIRVGRIFIDYLRNSKGSTSVLPYSLRARDRSS
VALPVAWNQLKKYKSGDAVTLKRALQILKKGRDPWANYFARAPVLPVQKARSAS
NT seq 2325 nt   +upstreamnt  +downstreamnt
atgccactgaaggaatatcaccgcaagcgagattttaaaaagactcgggagccgccggcc
cggaaaacgaaaaagccgttaaaggcggcaaaagagcatttgatgtttgtcgtgcaggaa
catcatgcctctcacttgcattatgattttcggctggaatggcagggggttttgaaaagc
tgggcggttccgaaggggcccagtctggatccacacttaaaacgtcttgctgtgcaggtg
gaggatcatcctttggagtacggtacctttgaaggtgtcattccggaaaagcagtacggg
gccggtcctgtgtatatctgggatacaggaacatggattccgaaagctccggtcgcggca
ggatttaaaaaaggtcatctggagtttgaacttaaaggcaaaagactgaagggcacctgg
gatttgattcgcaccagaatgcaggggcggcaggtgcagtggcttttggtgaagcgggaa
gaccgcttcgcccgggcggggtatgaggcgccgctgatcggagataaatccaccgtgcgg
cggcgagttcgcaccagaacctcattttcatttgttcagcccatgttggcattgctggtg
gctgagccaccccggggaccccaatggtggcacgaggtcaagtgggacggttatcgcatt
caggcccatctgcagggggcgaaggtgaaactgtatacaagggccgggcatgagtggtcc
ggtaagatggaaacagtcgttcaaagtctggccactctgaatgttcagtccgcggtcctt
gatggtgaggttgtggttttggatcgccaggggcgaagtcactttcaaaaactgcaaaac
tactttgattcggatccggaccaggagctgacatatgtcgcttttgatttgctgatgcta
aacggcgaggacctgcgggatcagtcgttgaaagagcggcggaggaagcttcagggaatt
ttaaaaggaaaacacaaaaatcttcgactcagtcagcagctcaagttgaatgcagcctcg
tggaaaaaactgcggcgtcaggggcttgagggagtgatttcgaaaaagctggatagcacc
tacatctccggtcgcaaaggtgagtgggtgaaaagcaagtttttaaaccggcaggagttc
gttattggcggctatgttccaggtcgcggcagtcgcagtgattttggagcgttgcttttg
ggtgtctatgaaaaaggacagtttcgttttgtgggaaaagtggggacgggctttagtcag
aacagtataacctcaattaaaaaacagttggatcgtatcaaagttgccaaaaaacctttc
tcggcaggagacccaccgaagtccggtgccgtctgggtgcggcccgagttgctggccgag
gtttcctttgccagttggactcatggaatgcatttgcgggcgccggtgtttgtgcagctt
cgcaaagacaagcccgcaccggaagtgacttcggatgccctgttgctgaccaatcccgac
aaagtgctttttgccgcggaaggaatcaccaagcttgaggtggctgaatactatatcgcc
atggttgagcgtatgcggccgtactttgaaaatcgcctgttggcattagtgcgctgtccg
gatggctcagcgggaaagtgtttttttcaaaagcatctcaacgcgaaggcagacaccatt
gcggtctttgaaaaagatgatgctttgtatgtgaaagatgcccgcgggcttctggaactg
gtgcagatgggggcctacgaaattcacagtcgaaacagcagagcagaggctccgggaaag
cctgaccagtttgtgttggatttggatccggggcctggtgtggcctggggtgaggtggtt
tcagcggccctcttgataaagaaagatctggagttgttggggcttcgcagctttgtgaag
ctgagcggaggcaaggggttgcatattcatgtcccgttccgtccgggcccttcgtgggag
gaagtgaagcgcttcacgcacagcctggcattgaattgggagcatcgttttccggatcgg
tttgtcagcaagatggcaaagaagattcgtgtcggacggatttttattgattaccttcgc
aattccaagggctcgaccagtgttttgccctattcattgcgcgcgcgcgacagaagctcg
gtggctttgccggtggcttggaatcagttgaaaaaatataaaagtggcgatgcggtcacc
ctgaagagggcattgcagattctgaagaaggggcgggacccgtgggcgaactatttcgcc
cgggccccggttctgccagtgcagaaggctagaagtgcttcttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (22)   

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