KEGG   Berkelbacteria bacterium GW2011_GWE1_39_12: UT28_C0001G0017
Entry
UT28_C0001G0017   CDS       T03992                                 
Name
(GenBank) UvrD/REP helicase, DNA helicase II / ATP-dependent DNA helicase PcrA
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
bbgw  Berkelbacteria bacterium GW2011_GWE1_39_12
Pathway
bbgw03420  Nucleotide excision repair
bbgw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bbgw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    UT28_C0001G0017
   03430 Mismatch repair
    UT28_C0001G0017
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bbgw03400]
    UT28_C0001G0017
Enzymes [BR:bbgw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     UT28_C0001G0017
DNA repair and recombination proteins [BR:bbgw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     UT28_C0001G0017
   MMR (mismatch excision repair)
    Other MMR factors
     UT28_C0001G0017
SSDB
Motif
Pfam: UvrD-helicase UvrD_C PDDEXK_1 AAA_19 UvrD_C_2 Viral_helicase1 Dna2 AAA_11 AAA_30 DEAD RnlA-toxin_DBD
Other DBs
NCBI-ProteinID: AKM81836
UniProt: A0A0G4B1K2
Position
13609..16632
AA seq 1007 aa
MLSKKFITEYQKLNPKQREAVDTIEGPVMIIAGPGTGKTQILAMRIANILANAQVNPSNI
LALTFTNSGAYAMRKRLLEIVGPSSYAISIHTFHSFCNEIINTFPEKFLTARRLNQLTDL
EQILYIQSILDKNNFKTIKPLKSPYLYQKAILDSINKLKQENIDPKKFEEKIEQELIDFK
TIDDLYHDKGAYKGEMKGKYKDELSSLERNKELAKVYKDYQKILSDEGKYDYADMILFVL
GAFKKEKDILSYYQEKYQYILVDEFQDTNTAQNEIVRSLGSFYESPNIFAVGDDEQSVFR
FQGASLENILFFSKTYPEAKVIILEDNYRSTQDILDLSRALISNNQNQIAGHLKVSKKLK
SNLTSKGKIYLAEFKNVATENFFIASEIKDLIEKGTDPNEIAVLYKQHSDVEDLTENLAR
LKVPYKLEVGGNILDDPEIQKIINYLKILDIKKPNDLLFFEVLSYDFFNIPPIEIYKLSR
KASKERESIVDTILSENKLSEPIKKFFSTLLDLQHFAQNNTFASTFEYLINNTGYLDYLL
KKEDTVHHLNRLQIFYEEIKKLNVRQKDLNIAGFLKYLDSLTENELKIKDREVEADFAGV
NLMTAHKSKGLEFENVFIFKLIDKHWGNKTKRELIKLPGNILSIQQNNDLSSEALAELEE
ERRLFYVALTRAKKNIYLSFADDYGDQESSKFAVPSQFLTELPNEKILKLETAKYEKESV
KRLALAFQNDKWHPGKALKEFIKQIVEDFSLSATSLNSYINCPKQFFLDHIIRVPKAKDF
SQSYGTAVHKAMENLFLIQIRDGKLATKSDFVKFYVNALDEEILTPAEIQRAKNDGTEIL
EKYYDFYKEEMIKKGPPISCEYNFSSHNVHFDNIPITGKIDKIEMINSIGNTVRIIDYKT
SQPKTVNDLLGQTKTSDKSYLYQAFFYKLLAEYDTSFKWKIAEIEFDFIQPEKGRFKKIK
IPIEEEEYKKFKELVSKSYSEIKKLNFDTNKKSCKAKRECDYINICN
NT seq 3024 nt   +upstreamnt  +downstreamnt
atgctttctaaaaaatttataactgaatatcaaaaactgaatccaaagcaaagagaagcc
gtcgatacgatcgaagggccggtcatgattattgccgggccggggacaggtaagacgcaa
atcttagcgatgagaattgcgaatattttagcgaacgcacaagttaatccttcaaatatt
ttggcgctaacatttaccaactcaggcgcttacgctatgaggaaaagattattggaaatt
gtggggccaagtagctacgccatttctattcatacgtttcactctttttgcaatgaaatt
attaatacttttccggaaaaatttttaacagccagacgcttaaatcaactgaccgattta
gaacaaattctatatattcaaagcattttagataaaaacaatttcaaaactattaaacct
ttaaaaagtccttatttatatcaaaaggcaattttggattcgattaataaattaaaacaa
gaaaatatcgatccaaaaaaatttgaggaaaaaatcgagcaagaactaattgattttaaa
actatcgatgatctctatcacgataaaggcgcatacaaaggcgaaatgaaaggcaaatac
aaagacgagctcagctcattagagcgcaataaagaactagcaaaagtttacaaagattac
caaaagattttaagcgatgaaggtaaatacgattatgccgacatgattctttttgtttta
ggcgcctttaaaaaagaaaaagatatcttaagttattatcaagaaaagtatcaatatatt
ttagtcgatgaatttcaagacactaacacggcccagaacgaaattgtgcgatctttgggc
agcttttatgaaagcccgaacatttttgctgttggcgacgatgagcaatcagtcttccgt
tttcaaggtgcctctttagaaaacattttattcttttctaaaacttatccagaagctaaa
gtgatcattttagaagataattacagatcaactcaagacatattagatttatcgcgagcg
ctaatttctaataaccaaaatcaaattgccgggcatttaaaagttagtaaaaagttaaaa
agtaatttaacttcaaaaggaaaaatatacttagcagaatttaaaaatgtcgccacagaa
aacttttttattgcttcagaaattaaggatctaatagaaaaggggaccgatccgaacgag
attgcggttttatataaacaacatagcgacgttgaagatttaactgaaaacttagcgcgt
ttgaaagtgccatataaattggaagtcggtggaaatattctcgacgatccggaaattcaa
aagattattaattatttaaaaattttagacattaaaaagcctaacgatttattatttttt
gaagtattaagttatgacttctttaatattccaccaatcgagatttacaaactatcgaga
aaagcgagtaaagaaagggaaagtatagtcgatacaatactgtcggaaaacaagctttca
gaaccaatcaaaaagttttttagcaccttacttgacttgcaacactttgctcaaaataac
actttcgctagcactttcgaatatttaattaacaatacgggttatttagattatctattg
aaaaaagaagatacagttcaccatttaaaccggttgcaaattttttatgaagaaattaaa
aaattgaatgtcagacagaaagatttaaatattgctgggtttttgaaatacttagacagc
cttacagaaaatgaattaaaaataaaagatagggaagtcgaagcagattttgccggcgta
aatttaatgacggcgcataaatctaaaggtttagaatttgaaaatgttttcatttttaaa
ttaatcgacaaacactggggtaataaaacaaaacgggaattaattaaattgcccggcaat
attttatcaattcagcaaaacaatgacttgtccagcgaagccttggcggagttggaagag
gaaagacgattattctatgttgcactaaccagagccaaaaagaatatttatctttctttc
gctgatgattacggcgatcaagaaagttcaaagtttgcagttccatcacaatttcttact
gaattaccaaatgaaaagatattgaaattggaaacagctaagtatgaaaaagaaagtgtt
aagagattggcattggcgtttcaaaatgacaaatggcaccctggcaaagcactgaaggag
tttattaagcaaatcgttgaagatttttctctatcggcaacttcgcttaactcatatatc
aactgtccaaaacaatttttcctagatcatattattcgcgtccctaaggccaaagatttt
agccaaagctatgggacagctgttcataaagcgatggaaaatctatttctcattcaaata
cgcgatggcaagttagcaacgaaatcagattttgtaaaattttatgttaacgcattagac
gaggaaatactgacaccggcagaaatacaaagagccaaaaacgatggtacagaaatatta
gaaaagtattacgatttctacaaagaagaaatgattaaaaaaggaccgccgatttcttgt
gagtacaatttttcttcccataatgttcattttgataatataccgatcacgggtaaaatt
gataagattgaaatgataaacagcattggtaatactgtcagaattatcgattacaaaacc
agccaaccaaaaacagttaatgatcttttggggcaaacgaagactagtgataaatcatat
ttgtatcaagcgtttttttataaactcttggctgaatacgacacatcgtttaagtggaaa
attgccgaaatagaatttgattttattcaaccagaaaagggaagatttaaaaagattaaa
attccaattgaggaagaagaatataaaaaatttaaagagctggtttccaaatcttatagc
gaaatcaaaaaattgaattttgataccaataaaaaatcgtgtaaagccaaacgcgaatgt
gattatataaatatttgtaattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (76)   
   KEGG ORTHOLOGY (1)   
   RefGene (73)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (95)   

Download RDF
DBGET integrated database retrieval system