KEGG   Bordetella bronchiseptica 253: BN112_4646
Entry
BN112_4646        CDS       T02344                                 
Symbol
hmp1
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
bbh  Bordetella bronchiseptica 253
Pathway
bbh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bbh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BN112_4646 (hmp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bbh03019]
    BN112_4646 (hmp1)
   03009 Ribosome biogenesis [BR:bbh03009]
    BN112_4646 (hmp1)
Enzymes [BR:bbh01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     BN112_4646 (hmp1)
Messenger RNA biogenesis [BR:bbh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BN112_4646 (hmp1)
Ribosome biogenesis [BR:bbh03009]
 Prokaryotic type
  rRNA processing factors
   BN112_4646 (hmp1)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 Anti-TRAP
Other DBs
NCBI-ProteinID: CCJ56560
UniProt: A0A0C6PEF3
Position
complement(5014546..5017731)
AA seq 1061 aa
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLDVPQGMSIIARTAGIGRNVDELQ
WDLSYLLQLWTAIDGAARDNAAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVMPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAV
DVNSARSTRGADIEETALRTNLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAAVHAQVPVDVATFLLNEKRADITKMEARLKVNLVLIPNKHLETPH
HHIERLRHDDPRLEETKTSFELAEAPATDLTWQPREHEIKARPEALVKGITPAQPAPVST
PAPAKAPAAAAATQGGLGGWFKRLTSWLGGSAEPAKTETKSEDEKRGANRARRAHDGQDR
RGERHGSDRNRHRRNEPRGDHAESGDARHHVRGGRRQEERGERGERGQKEARTEREQTQQ
QQAAGQPRQERPSTAETGEEGGRGRGRRGRGRGRREEGQTDTPMTEQENMVAALAETVAA
ALPEKRQAAPAPAAAAAAALTVAEAASSNELAPVAEDADGIDGIDANVDAGAETGSDPER
KRRRRRSRRGRRSQEDGSTVNAEGVEGADDEQVDAPAGVADIETPAQPAESETVAAPVAV
SVAADEPAATIETAAAEPAAPQATEAPRAEPVVAAADTAPQAVQPVQAELTPVETPQAQA
QPAEPAAAAPVETAPVETAPVETAPVETAPVETAPVETAPVETAPVETAPAATTPVEPAE
QAAAPVEAEAPVAQPEKTPEPAAVRPAEAIVVPAQAAAPATGALHDVLDAAGLTWVETDP
ERHAQTQMRIAAAAAPVRLGRERKPVASVSNEPLVQVETRH
NT seq 3186 nt   +upstreamnt  +downstreamnt
atgaagcgcatgctgtttaatgcgacgcaccaggaagaactgcgcgttgcaatcgtcgac
ggtcagaaactgatcgatctcgacatcgagactgccggtcgcgaacaacgcaaaggcaac
atctacaaaggcgtcatcacccgcatcgaacccggcctggaagcctgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcgcgcagtttcttcaaggaa
ggcgtggacgtgcgcaccgcacgcatccaggacgccctgcgcgaaggccaggagctgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgccgccctgaccacgttcatctcg
ctggccggccgctacctcgtcctgatgccgaacaacccgcgcggcggcggcgtatcgcgc
cgcgtcgaaggcgaggaccgccaggaactgcgcgacaccatggagcagctcgatgtcccc
cagggcatgagcatcatcgcgcgcaccgccggcatcgggcgcaacgtcgacgaactccag
tgggacctgtcctatctgctgcaactctggaccgccatcgacggcgcggcgcgcgacaat
gccgccccgatcctgatctacctcgagtccagcctcgtcatccgcgcgatccgcgactat
ttttcgcccgagatcggcgaaatcctgatcgacaccgacgaaatcgccgaccaggccacc
gccttcatgagcgtggtcatgccggacaacgtccagcgcgtcaaacgctaccgcgacgac
atcccgctgttctcgcgcttccagatcgaacaccagatcgaaaccgcgtactcgcgcacc
gtgcagctgccctcgggcggcgcggtggtcatcgaccacactgaagccctggttgccgtg
gacgtgaactcggcccgctccacgcgcggcgcggacatcgaggaaaccgcgctgcgcacg
aacctggaagccgccgaggaagtggcccgccagttgcgcctgcgcgacctcggcggcctg
atcgtgatcgacttcatcgacatggaggacagcaagaaccagcgcgccgtcgaacagcgc
ctgcgcgatgccctgcatttcgaccgcgcccgcgtccagatgggcaagatctcgcgcttc
ggcctgatggagctgtcgcgccagcggctgcgtccggcgctcaacgaaggctcgcacatc
acttgcccgcgctgcaacggcaccggcgtgatccgcgacgccgagtccagcgccctgcac
gtgctgcgcctgctgcaggaagaagccatgaaggaaaacaccgcggcggtgcacgcccag
gtgccggtcgacgtggccaccttcctgctgaacgaaaagcgcgccgacatcaccaagatg
gaagcccgcctgaaggtcaacctggtgctgattcccaacaagcacctggagacgccgcac
caccatatcgaacgcctgcgccacgacgatccgcgcctggaagaaaccaagaccagcttc
gagctggccgaggccccggccaccgacctcacctggcagccgcgcgagcacgagatcaag
gcgcgccccgaagcgctggtcaagggcatcacgcccgcgcagccagccccggtgtccacg
cccgcccccgccaaggcgcctgccgccgcggcggccacccagggcggactgggcggctgg
ttcaagcgcctgacctcctggctgggcggcagcgccgaaccggccaagaccgaaaccaag
tccgaagacgaaaagcgcggcgcgaaccgtgcgcggcgcgcccacgacggccaggaccgc
cgcggcgaacgccacggctcggaccgcaaccgccatcgccgcaatgagccccgcggcgac
cacgccgagagcggcgacgcgcgtcatcacgtgcgcggcggacgacgccaggaagagcgc
ggtgaacgcggcgagcgtggccagaaggaagcccggaccgaacgcgagcagacccagcaa
cagcaggcagccggccagccgcgccaggaacgcccctcgaccgccgagaccggcgaagaa
ggcggccgtggccgtggtcgtcgcggccgcggacgtggccgtcgcgaggaaggccagacc
gacacgcccatgaccgagcaggaaaacatggtggcggcactggccgaaaccgtggctgcc
gccctgcccgaaaagcgccaggcggcgcccgcgccggcggccgccgctgccgcggccctg
acggtggccgaagccgccagcagcaatgagctggctcccgtggccgaggatgccgacggc
atcgacggtatcgacgccaatgtcgacgccggcgccgaaacgggtagcgatcccgagcgc
aagcgtcgccgtcgtcgcagccgccgtggccgccgcagccaggaagacggcagcacggtc
aatgccgaaggcgtcgaaggcgccgacgacgagcaggtcgacgcgccggcgggcgtagcg
gacatcgagacgcctgcccagccggccgagtccgagaccgtggccgcccccgtggcagtc
agcgtggccgccgacgagcccgccgccacgatcgagaccgccgccgccgagcctgccgcg
ccgcaagctaccgaggcgccccgggccgaacccgtggttgcagccgccgacaccgccccg
caagcggtccagcccgtgcaagcggaactgacgccggtcgaaacgccgcaggcgcaagcc
cagccggctgagccggcagcggccgccccggtggaaacggctccggtcgaaacggctccg
gtcgaaacggctccggtcgaaacggctccggtcgaaacggccccggtcgaaacggccccg
gtcgaaacggccccggtcgaaacggctccggcggcaaccaccccggtcgagcctgccgag
caggccgcggccccggttgaagccgaagcgcccgtcgctcagcccgaaaagacgcccgag
cccgccgccgtccgtcccgccgaagccatcgtggtgcccgcgcaagcggccgcaccggca
accggcgcgctgcacgacgtcctcgacgccgccggcctgacctgggtcgaaaccgatccg
gaacgtcacgcgcaaacccagatgcgcatcgccgcggccgccgcgccggtgcgcctgggc
cgcgagcgcaagccggtggcttcggtttccaacgaaccgttggtgcaagtcgaaacgcgt
cactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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