KEGG T01328: BBIF

Bifidobacterium bifidum S17: BBIF_1611

Entry

BBIF_1611 CDS T01328

Gene name

rho

Definition

transcription termination factor Rho

Orthology

K03628

transcription termination factor Rho

Organism

bbi Bifidobacterium bifidum S17

Pathway

bbi03018

RNA degradation

Class

Genetic Information Processing; Folding, sorting and degradation; RNA degradation [PATH:bbi03018]

SSDB

Motif

Pfam:

ATP-synt_ab Rho_RNA_bind Rho_N SAP AAA_25 FtsK_SpoIIIE AAA_22 NACHT

Other DBs

NCBI-GI:

310288131

NCBI-GeneID:

9847853

UniProt:

E3EN83

Position

complement(1950854..1952947)

AA seq 697 aa
MQYGLLRKGKRVATSQNLEGMKLIELKELAKQMGLRGTSTMRKPELVATLQAARSGGEAP
AGVTVRPVKGAASKPTQQTQPAAQAAQTPEQAPKAEPKGSAPVSAADDAVAGLVASLPEP
DAASTRTPRISRQKAAESDSKDDRAAAPRRRTRDDAKAGQVAADLFDELDIAPADDQPRH
RDDAADSGMMRRRRRTIEPRERDQQNDTVRDLDDILATLPVQNANADAARGTRGDRDNRD
DDEREFTRRNRSDRADRSDRGDRGGDRNDRGDRGNDRNNDRRQRRMRSRDRGGRDYDDRD
TREVRISDHQDNGGDDLVPVAGIVDVLDSYAFVRTSGYLPGPNDVYISMGQVKKYGLRKG
DAVTGSIRAPREGDRRNQRQKFVPLQSVDTINGMSVEEAANRPQFAKLTPLYPQERLKQE
TTPNKLTGRIMDIVSPIGKGQRGLIVSPPKAGKTITLQNIANAITTNNPEVHLMVVLVDE
RPEEVTDMERTVAGEVISSTFDRPASDHTTVAELAIERAKRLVELGQDVVVLLDSMTRLA
RAYNIAAPASGRILSGGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVI
FEEFKGTGNMELRLSRELADKRLFPAIDVNASGTRREELITSPQELPIIYRLRRLLGGME
PEQAYQTLVPRLKKTATNRDFLSAIIQQSNSNPVNGN

NT seq 2094 nt +upstreamnt +downstreamnt
gtgcaatacggtctgctaaggaaaggcaaacgagtggcaactagccagaatcttgaaggt
atgaagctgatcgagctcaaggagctcgccaagcaaatgggtctgcgcggtacgtcgacg
atgcgcaagccggaattggtcgccaccctgcaggctgcacgatcaggcggcgaggcgccg
gcgggcgttaccgtgcgaccggtaaagggcgccgcaagcaagccgacccagcagacgcag
cccgctgcacaggccgcgcagactccggaacaggctcccaaggcggagcccaagggaagt
gcaccggtgtcagcggcggatgatgcggtggccggactggtcgcgtctctgcccgagccc
gatgcagcctcgacccgcacgccgcgtatctcccgccagaaggccgccgaatccgacagc
aaggacgaccgcgccgcggctcctcgccgtcgcacccgcgacgatgcaaaggcgggccag
gtggctgccgatctgtttgatgaacttgacatcgcgccggcggacgatcagccgcgtcat
cgcgatgatgcggctgattccggcatgatgcgtcgtcgtcgccgtaccatcgaaccgcgc
gagcgcgaccagcagaacgacaccgtccgcgacctcgacgatattctcgccacgcttccg
gtgcagaacgccaatgcggacgccgcccgcggcacccgtggtgaccgtgataatcgagat
gacgacgagcgcgaattcacccgccgcaaccgtagcgaccgcgctgaccgttccgaccgc
ggcgaccgcggcggcgatcgcaatgaccgtggcgaccgcggtaacgaccgcaacaacgac
cgtcgccagcgccgcatgcgcagccgcgaccgtggcggccgcgactacgatgatcgcgac
acccgcgaagtgcgcatctccgaccatcaggacaacggcggcgacgatctcgtgccggtc
gccggcatcgtcgacgtgctcgactcctacgccttcgtgcgcacttccggctacctgccc
ggcccgaacgacgtgtacatctcgatgggtcaggtcaagaagtacggcctgcgcaagggc
gacgccgtgaccggatccatccgcgcgccgcgcgagggcgaccgccgcaaccagcgccag
aagttcgtgccgctgcagtccgtcgacaccatcaacggcatgagcgtcgaagaggcggcc
aaccgcccgcagttcgccaagctcaccccgctgtacccgcaggagcgcctcaagcaggag
accacgccgaacaagctcaccggccgcatcatggacatcgtttccccgatcggcaagggc
cagcgcggcctgatcgtctccccgccgaaggccggcaagacgatcacgctgcagaacatc
gccaacgcgatcaccacgaacaaccccgaagtgcacctgatggtcgtgctggtggacgaa
cgccccgaagaagtcaccgacatggagcgcaccgtggccggcgaggtcatctcctcgacc
ttcgaccgcccggcctccgaccacaccaccgtcgccgagctcgccatcgagcgcgccaag
cgactcgtggagctcggtcaggacgtggtggtgttgcttgactcgatgacccgtctcgcc
cgcgcctacaacatcgccgcgccggcctccggccgcatcctgtccggtggtgtggacgcc
caggcgctctacccgccgaagaagttcttcggcgccgcccgcaacatcgaaaacggcggc
tcgctgaccatcatctcctccgcgctggtggagaccggctccaagatggacgaggtgatc
ttcgaggagttcaagggcaccggcaacatggaactgcgtctgagccgcgagctggccgac
aagcgcctgttcccggccatcgacgtgaacgcctccggcacccgccgcgaagagctcatc
acctcgccgcaggaactgccgattatctatcgtctgcgccgtctgctcggcggcatggag
cccgagcaggcataccagacgctggtgccgcgcctgaagaagaccgcgacgaaccgcgac
ttcctctccgccattatccagcagagcaacagcaacccggtcaacggcaactga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (16)   

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