KEGG   Bifidobacterium breve JCM 7017: B7017_0464
Entry
B7017_0464        CDS       T03120                                 
Name
(GenBank) Metal-dependent hydrolase
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
bbrj  Bifidobacterium breve JCM 7017
Pathway
bbrj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bbrj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    B7017_0464
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bbrj03019]
    B7017_0464
Messenger RNA biogenesis [BR:bbrj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     B7017_0464
SSDB
Motif
Pfam: RNase_J_C Lactamase_B Lactamase_B_2 RMMBL Lactamase_B_6 DUF1732
Other DBs
NCBI-ProteinID: AHJ17002
Position
591388..593088
AA seq 566 aa
MLIAPPKYRKGSMRITPLGGLGEIGRNMNVIEYNGHLLLIDCGVLFPEEEQPGVDLILPD
FSYIKNRLDKVDALVLTHGHEDHIGGVPYLLKLRPDIPLIGSKLTLAFVDAKCKEHRQNP
TKVEVSGRDKLKVGPFDLEFVNVTHSIPDALAVYVKTPAGSLIDTGDIKLDQLPLDHRIT
DLVEFGKIGEKGVDLLMMDSTNAEVPGFVKPETSIGPALDQAFAQATRKIIVASFSSHVH
RVQQVVDAAHKYGRKVVFVGRSMVRNMSIAADLGYLHIPEGTVVDLKKANDIQDDKLVYM
CTGSQGEPMAALGRIADGNHRDIHINEFDTVILASSLIPGNEHGVYKVINKLVQLGAKVV
NRDNAAVHVSGHCNEGELLYMYNIVKPKCAMPIHGENRHLVANGLIAVKTGVDPQNVVLA
EDGDVVDLYHGKAAVVGSVPCGYVYVDGDSVGELTDEELEKRRILGTEGFVSAFVVVDTD
NHEVVTGPKIYLNAVAEDESEFDKVRHQIAEQLNDAMMQGTRDTYKLQQIMRRTLGGWVA
RQLHRKPMIVPVVADIAQDVEIVDNN
NT seq 1701 nt   +upstreamnt  +downstreamnt
gtgctgatcgccccgccgaagtaccgcaagggctccatgcgcatcacgccgctcggcggc
ttgggcgaaatcggccgcaacatgaacgtgatcgaatacaacggtcacctgctgcttatc
gactgcggcgtgctcttccctgaagaggagcagccgggtgtcgatctcatcctgcctgat
ttcagctacatcaagaaccgtctcgacaaggttgacgccctggtgctcacccacggccat
gaagaccacatcggtggcgtgccttacctgctgaagctgcgcccggatattccactgatt
ggttccaaactgactcttgcctttgtggacgccaagtgcaaggaacaccgccagaacccc
accaaggtggaggtctccggccgcgacaagctcaaggtgggtccgttcgacctcgaattc
gtcaacgtcacccactccatcccggatgccctggccgtttacgtcaagaccccagccggc
tccctgattgacacgggcgacatcaagctcgaccagctgccgctcgatcaccgcatcacc
gatctcgtggagttcggcaagatcggcgaaaagggtgtggatcttttgatgatggattcc
accaacgccgaggttcctggcttcgtcaagccggagacctccattggtccggctcttgac
caggcatttgcgcaggctacccgcaagatcatcgtcgccagcttctcctcccatgtgcac
cgcgtgcagcaggtggtggatgccgcccacaagtacggtcgcaaggtcgtgtttgtcggc
cgttcgatggtgcgcaacatgtccatcgctgccgatcttggctatctgcacattcctgaa
ggcaccgttgtggacctcaagaaggccaacgacattcaggacgacaagctcgtctacatg
tgcaccggctcccaaggcgagccgatggccgcccttggccgtatcgccgacggcaaccac
cgtgacatccatatcaatgagttcgacacggtgattctcgccagctccttgattccgggt
aacgagcacggcgtctacaaggtcatcaacaagctggtgcagctcggcgccaaggtcgtc
aaccgcgacaatgccgccgtgcacgtgtccggtcactgcaatgagggcgagctgctgtac
atgtacaacatcgtcaagcccaagtgcgccatgcctatccacggcgaaaaccgccatctg
gtggccaacggactgattgccgtcaagaccggtgtcgacccgcagaacgtggtgctggcc
gaggacggcgacgtggtcgacctctaccacggcaaggccgcggtcgtcggctccgtgccg
tgcggctacgtgtacgtcgacggcgattccgtcggcgagctgaccgacgaggagctggag
aagcgccgcatcctcggcaccgagggcttcgtctccgcgttcgtggtggtcgacaccgat
aaccacgaggtcgtcaccggcccgaagatctacctgaacgccgtggcagaggacgaaagc
gagttcgacaaggtgcgtcaccagattgccgaacagctgaacgacgcgatgatgcagggc
actcgcgacacctacaagctgcagcagattatgcgtcgtacactcggcggatgggttgcc
cgtcagcttcaccgtaagccgatgatcgtgcctgtcgtggccgacatcgctcaagacgtc
gaaatcgtagacaacaactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (13)   

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