KEGG B.burgdorferi: BB0389

Borrelia burgdorferi B31: BB0389

Entry

BB0389 CDS B.burgdorferi

Gene name rpoB

Definition DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)

Orthology K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]

Pathway bbu00230 Purine metabolism
bbu00240 Pyrimidine metabolism
bbu01100 Metabolic pathways
bbu03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:bbu00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:bbu00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:bbu03020]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45
RNA_pol_Rpb2_2 RNA_pol_Rpb2_1 Peptidase_M23
PROSITE: RNA_POL_BETA NLS_BP

Other DBs NCBI-GI: 15594734
NCBI-GeneID: 1195226
JCVI-CMR: BB_0389
UniProt: Q59191

Position complement(401693..405160)

AA seq 1155 aa
MIKRVHLGQGRADEILDLPNLIEIQLNSYEKFLQLDKLKSKKPLLNEGLESVFRNIFPIK
SGNGDVALEYERYYIENDALNFTEKECKRKGQSYEAVLKVRLNLQFLTTGEIRQKDVYMG
TIPLMTERGTFIINGAERVVVSQIHRSPGVVFYKEKDLYSARIIPYRGSWLEFEIDSKKD
YLYVKIDRKKRILITLFLRALGFDTREKIIETFYNIKKIKVEDGTKRDLPGQYLAKSINI
RENMYYRAGDKITLQDVEDFLQNGVNEIELVDFDGYNDISGKRFVSSNVILNCLEKEDAF
FALKDGSKELPKESVMLAVYGSLFPGEPISIDNAENDLKTIFFSERRYDLGRVGRYKLSK
KFGFDDLTTSVLTMDDIVNTISHLLRIYEGHDILDDIDHLGNRRVRSVGELLTNIYKGAM
SRVEKIAKDRMSNKEVFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKR
RLNALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYSRVNDYGFLE
TPYRKVVNGVVTDQLEYLSAIDEEKKCIAQANAAFNSNGKYLEDLVSVRISGDYTTTSPT
NIDYMDVSPRQLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPKPPIVGTGMESVV
AKDSGVVVKAKRSGEVILATSSKIVVKPFEAENAKDLDEYHIVKYERTNQDTCFNQSVLV
KEGQKVERGEIIADGPATRYGELALGNNLLLGVIPWNGFNYEDAILISDRIVKEDLYTSI
HIKEFSIEVRETKLGPEKVTGDIPNVSEKILNKLDENGIIRIGTYVKPGDILVGKVTPKS
EGDITPEFRLLTSIFGEKAKDVKNNSLKVPHGTEGTVIDVQRITKEDVGNLSPGVEEILK
VYVAKKRKLKEGDKMAGRHGNKGVVAKILPVEDMPYLADGTPLDICLNPLGVPSRMNIGQ
LMESQLGLAGKYLGESYNVPVFESATNEQIQEKLKTAGFNPTSKEILYDGYTGEPFENEV
MVGVIYMLKLHHLVDDKMHARSTGPYSLVSQQPLGGKAQFGGQRLGEMEVWALEAYGAAH
TLQELLTVKSDDMSGRVKIYENIVKGVPTNVSGIPESFNVLMQELRGLGLDLSIYDDAGN
QVPLTEKEEELINKS

NT seq 3468 nt +upstreamnt +downstreamnt
atgataaaaagagttcatctgggacaaggaagagctgatgagattttagacctacctaac
ctgatagaaatacaattaaattcttatgaaaaatttttacaacttgataaattaaaaagt
aaaaaacctttacttaatgagggccttgagtctgtttttagaaatatatttcccattaaa
agtggaaatggtgatgttgctcttgagtatgaaagatactatatagaaaacgatgccctt
aattttacagaaaaagaatgtaaaagaaagggtcaaagttatgaggctgttttaaaagta
agattgaatttgcaatttttgactactggggaaataaggcaaaaagacgtatacatggga
actattcctttaatgacagaaagaggcacttttattattaatggggctgagagggttgtt
gtttctcagattcacagatccccaggagttgttttttataaagaaaaagatttgtattct
gctagaataattccttatcgtggttcttggttagaatttgagattgattcaaaaaaagat
tatctttatgtaaaaatagatagaaaaaaaagaatacttataactctttttttaagagct
ttagggtttgatacgagagaaaaaataatagaaactttttacaatattaaaaaaattaaa
gttgaagacggtacaaaaagagatcttccagggcaatatttagctaagagtattaacata
agagagaatatgtattatcgtgcaggagataaaattactctgcaagatgttgaagatttt
ttacaaaatggagtaaatgaaatagagcttgttgattttgatggttataatgatatttct
ggaaagcgctttgtaagttcgaatgttattctaaattgtcttgaaaaagaggatgctttc
tttgctttaaaggatggctctaaagagcttccaaaagaatcagttatgctagctgtttat
ggttctctttttcccggtgagccaatatcaattgataatgctgaaaacgatttaaaaacc
atattcttttctgaaagaagatatgatcttggacgtgtggggcggtataaactttctaaa
aaatttggatttgatgatttaactacatcggttttaactatggatgatattgttaacacc
atatctcatcttttaagaatatatgaaggccatgatattcttgatgatattgaccattta
ggaaatagaagggttcgttctgttggtgagcttcttactaatatatataaaggcgcgatg
tcaagagttgaaaaaattgctaaagatagaatgtctaacaaggaagtttttaatctaaag
cctcaagaattaataagcgttaagcctattgtatctgctgttaaagaattttttgcaacc
agtcagctttcacagtttatggatcaggtcaatcctttggctgagcttactcacaaaagg
cgtcttaatgctcttggaccaggaggactttcaagagatagggcaggatttgaagtaaga
gatgtgcattatactcattatggtagaatgtgtcctattgaaacccctgaagggccaaat
attggacttattgtttctttggctacttattctagagttaatgattatggttttttagaa
actccttataggaaagttgttaatggagtggtgacggaccaattagaatatttatctgct
attgacgaagagaaaaagtgtattgctcaggctaatgctgcttttaattctaatggaaag
tatcttgaagatttagtttctgttagaatttctggtgattatactacaacaagtcccaca
aatatagactatatggacgtttctcctaggcagctaatttcagtatcttcggcgttaatt
ccttttcttgagcacaatgatgcaaatcgagctcttatgggttctaatatgcaaagacaa
gcagtacctttgcttttccctaagcctcctattgttggtacgggtatggaaagcgttgtt
gcaaaggattcaggagtagttgttaaggctaaaagaagtggggaagttattcttgcaaca
agtagtaagatagttgttaaaccttttgaggcagagaatgctaaagatttagatgaatat
catattgttaagtatgaaaggacaaatcaagacacttgttttaatcaatccgttttagtt
aaagagggtcaaaaagttgaaaggggcgagataatagctgacggtcctgctactagatat
ggagaacttgctcttggtaataatttattgctaggagttattccttggaatggatttaat
tatgaggatgctatattaatttctgatagaattgtaaaggaagatctttatacatctatt
catatcaaagaatttagcatagaggtaagagaaactaaacttggtcctgagaaagttaca
ggagatatacctaatgttagtgaaaagatattaaataaattggatgaaaatgggattata
cggataggaacttatgtaaagcccggtgatattctggttggtaaagttactccaaagtca
gaaggagacattactcctgaatttagactgttaacttccatttttggagaaaaagcaaaa
gatgttaaaaataattcattaaaagttcctcatggtactgaaggtacagttattgatgtt
caaaggattaccaaagaggatgttggtaatctttctcctggagttgaggagatacttaaa
gtttatgttgccaaaaaaaggaagcttaaagagggcgataaaatggctggacgacatggt
aataagggtgttgttgcaaagattcttcctgttgaagatatgccttatcttgcagacgga
acccctcttgatatatgcttaaatcctttgggagttccatctagaatgaatatcggacag
ttaatggaatctcaattaggccttgctggtaaatatcttggtgaatcttataatgttcct
gtttttgaatctgctacaaatgaacaaattcaggaaaaattaaaaactgctggatttaat
ccaacttctaaagaaattttatatgatggttatacaggagagccgttcgaaaatgaagta
atggttggggtgatttacatgcttaaactacaccatcttgttgatgataaaatgcacgca
agatcaacaggcccatattctcttgtttctcagcaacctcttggaggaaaggctcaattt
ggtgggcaaagacttggagaaatggaggtttgggctcttgaagcttatggtgcggcgcac
acccttcaagaacttttaacagttaaatctgatgatatgtcaggcagagttaaaatatat
gaaaatatagtaaaaggcgttcctactaatgtatcagggattcctgagtcttttaatgtg
ctaatgcaagagcttagagggcttggacttgatttgtcaatttatgatgatgctgggaat
caggttcctttgacagaaaaagaagaagaattgattaataaaagctag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JCVI-CMR (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (9)   
   Pfam (7)   
   PROSITE (2)   
All databases (24)

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