KEGG   Bifidobacterium breve ACS-071-V-Sch8b: HMPREF9228_1216
Entry
HMPREF9228_1216   CDS       T01844                                 
Name
(GenBank) UvrD/REP helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
bbv  Bifidobacterium breve ACS-071-V-Sch8b
Pathway
bbv03420  Nucleotide excision repair
bbv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bbv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HMPREF9228_1216
   03430 Mismatch repair
    HMPREF9228_1216
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bbv03400]
    HMPREF9228_1216
Enzymes [BR:bbv01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HMPREF9228_1216
DNA repair and recombination proteins [BR:bbv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HMPREF9228_1216
   MMR (mismatch excision repair)
    Other MMR factors
     HMPREF9228_1216
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 Viral_helicase1 AAA_12 AAA_30
Other DBs
NCBI-ProteinID: AEF26679
Position
complement(1388034..1389581)
AA seq 515 aa
MEQAQQILEGLDEQQRRAATTLNGPVRIIAGAGAGKTRTVTRRIAYACATGAWKPERALA
VTFSVKAAAEMRARLEQLGLQGGTSGVTAATFHSAALRQLNSVWADVCEAPFPHLIENQR
DTVSRAITRATAVRDIDALTVRDVLAEINWAKISLVPIDDYARISVEANRQPPAGFDAAR
FAAIYDAYEQEKTSQGEIDFDDILLLVCHIMDDFPEAAAQIRSSIGWLTVDEYQDVSPLQ
HRLLNLWLGGGGPNGKAAMNRNVCVVGDPAQTIYSFAGASSWHLLQFADEFGPLSADINL
NTDYRSTPEVVGLANRVLAAAPNREDYLKLVSAREKGVRISRTAYDTDDLEAQGVAARIA
RLVAQGAKPSDCAILTRINAQQPVFGAALRAARLKFRVRKDSGWQSSSLADDATTRRALL
EAMGLDATGSQQSTDPGVMISTIHAAKGLEFKHVFLVGCSEGLLPYGSPEPGETLEEERR
LMYVGVTRAEDSLHLSYARTKDGYGAQQRRPSRFL
NT seq 1548 nt   +upstreamnt  +downstreamnt
atggaacaagcgcagcagattcttgaagggctcgatgagcagcagcgccgggcggcgact
acgctgaatggcccggtgcgcatcatcgccggtgcaggcgcaggcaagacccgtaccgtt
acgcgacgcatcgcctatgcctgcgcgacgggagcatggaagcccgagcgggcgcttgcc
gttacgttttcggtgaaagccgctgccgaaatgcgtgctcgacttgagcagctggggctg
caaggcggtacatccggtgttaccgccgctacttttcactctgcggcattgcgccagctc
aacagtgtgtgggccgacgtctgtgaagcgccattcccgcatctcatcgaaaatcagcgt
gacaccgtatctcgtgccatcactcgtgctaccgctgtacgagatattgatgcactgacc
gtgcgcgatgtactggctgaaatcaattgggccaaaatttctctggtacccatcgatgat
tacgcgcgtatcagcgtagaggccaatcgtcagccgcccgcagggttcgatgccgctcga
ttcgccgctatctatgatgcgtatgagcaagagaaaacatcgcaaggagaaatcgatttt
gacgacatcctgctgctggtatgccacatcatggatgattttcccgaagcggcggcgcag
attcgttcctccatcggctggctcaccgttgatgagtatcaggatgtttctccgctgcag
catcgtttgctgaacttatggcttgggggaggcgggccgaatggcaaggctgctatgaac
cgcaatgtatgtgtggtcggcgaccctgcacagaccatctactcgttcgcgggtgcatcc
agctggcatctgttgcagttcgccgatgagttcggccctctgtctgcagacatcaacctc
aacaccgactaccgttcgactcctgaagtggtgggtctcgccaatcgggtgcttgccgcg
gcccccaatcgtgaggattatttgaagctggtttccgccagggagaagggggtgcgcatc
agccgaacggcctatgacaccgatgacctggaagcacaaggtgtggcggctcgcatcgca
cgacttgttgcacagggtgcgaagccctccgattgcgcgattctgacgcgcatcaacgcg
cagcagccggttttcggtgcggcattgcgcgcggcaaggctgaaattccgcgtgcgtaag
gattccggatggcagtcttcgtcgctcgcggatgatgccacgacacgcagggccctgttg
gaagccatgggattggacgccacaggcagccagcagagcaccgaccccggcgtcatgatt
tccaccatccatgcggccaaaggtctggaattcaaacacgtctttctggtaggctgctcc
gaagggctattgccgtacgggtcaccggaaccgggggagacgttggaagaggagcgacgg
cttatgtacgtgggcgtcacacgagccgaggactcgctgcatctgtcatatgcgcggacc
aaggatgggtatggggcgcagcagcgccgcccttcccgcttcttgtga

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