KEGG   Bifidobacterium breve ACS-071-V-Sch8b: HMPREF9228_1371
Entry
HMPREF9228_1371   CDS       T01844                                 
Name
(GenBank) RNA pseudouridine synthase
  KO
K06177  tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
Organism
bbv  Bifidobacterium breve ACS-071-V-Sch8b
Brite
KEGG Orthology (KO) [BR:bbv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:bbv03009]
    HMPREF9228_1371
   03016 Transfer RNA biogenesis [BR:bbv03016]
    HMPREF9228_1371
Enzymes [BR:bbv01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.28  tRNA pseudouridine32 synthase
     HMPREF9228_1371
    5.4.99.29  23S rRNA pseudouridine746 synthase
     HMPREF9228_1371
Ribosome biogenesis [BR:bbv03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    HMPREF9228_1371
Transfer RNA biogenesis [BR:bbv03016]
 Prokaryotic type
  tRNA modification factors
   Psudouridine synthases
    HMPREF9228_1371
SSDB
Motif
Pfam: PseudoU_synth_2 fvmRadSAM-pep
Other DBs
NCBI-ProteinID: AEF26369
Position
complement(1557170..1557997)
AA seq 275 aa
MTWISPATSPSPSPLSKPHRYVIDEPHIPFEMDVLYEDERIIVVDKPHFLATMPRGMWYR
ETALIRLRERLGEPDITPAHRLDRMTAGVLVFVRDPACRGAYQMLFQNKQATKVYECLAS
CAPIRRPRFGTITQAEPPRPFPLLRRSHITKERGTLAAFEEPGAVNAETLIERGELILTS
AGGRWREAPEGGPCLENPPICRYTLHPRTGKTHQLRVHMNSLGLPIVGDDFYPRIQTRLY
DDFSQPLQLVARVLRFTDPITGKRQEFVSRIPLIS
NT seq 828 nt   +upstreamnt  +downstreamnt
atgacgtggataagccccgcaacctcgccaagtccgtcaccgttgagtaagccacaccga
tacgttattgacgagcctcatattccgtttgagatggacgtgctgtatgaggacgagcgg
atcattgtggtggataagccgcattttctggctaccatgccgcgcggcatgtggtatcgc
gaaaccgcgctgatccgattgcgcgagcgtctgggggagccggatatcacaccggcccac
cgtttggatcgcatgactgcgggcgtactggtctttgtgcgtgatccggcttgccgtgga
gcgtatcagatgctgttccagaacaagcaagccaccaaggtctatgaatgtctggcatcg
tgcgcgccgattcgtcgaccgcgattcggcacgattacacaggctgagccgccgcgtccg
tttccgttgctgcgccgctcgcacatcaccaaggagcgtggcacgttggccgccttcgag
gagccgggcgcagtcaatgctgagaccctgatcgagcgcggcgaactcatacttacttcc
gctggcgggaggtggcgcgaagcgccggagggtggtccctgtctggagaatccccccatc
tgccgctacacgcttcatccgcgcaccggcaaaacccatcaactgcgcgtccacatgaac
tcactgggcctacccatcgtgggtgacgatttctacccgcgcatccagacgcgcctttac
gacgatttcagccaaccattgcaattggtcgcacgtgtgctgcgcttcaccgacccaata
acagggaagcgacaagaattcgtttcccgtataccattaatcagctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

Download RDF
DBGET integrated database retrieval system