KEGG   Paraburkholderia caribensis: K788_0005810
Entry
K788_0005810      CDS       T04141                                 
Name
(GenBank) DNA topoisomerase IB, poxvirus type
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
bcai  Paraburkholderia caribensis
Brite
KEGG Orthology (KO) [BR:bcai00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bcai03032]
    K788_0005810
   03400 DNA repair and recombination proteins [BR:bcai03400]
    K788_0005810
Enzymes [BR:bcai01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     K788_0005810
DNA replication proteins [BR:bcai03032]
 Prokaryotic type
  DNA Topoisomerases
   K788_0005810
DNA repair and recombination proteins [BR:bcai03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      K788_0005810
SSDB
Motif
Pfam: Topoisom_I Top1B_N_bact
Other DBs
NCBI-ProteinID: ALL66662
UniProt: A0A0P0RDP2
Position
2:516678..517874
AA seq 398 aa
MKTMTRNAIDAIAQGLSTAMPAGLRHADDTRPGYTRRKLRSVFVYFDLDGRRIDDESQIA
RINALAIPPAYTDVWICPDPRGHIQATGRDARGRKQYRYHPQWRETRDADKFGRMAAFGH
ALPKIRARVARDLAREGMPREKVIAAVVHLLDTTLIRIGSVEYARDNQSYGLTTLRKKHV
KIRAGEVRFRFAGKSGIEHDVSVDNARVKRIVRKCAELPGHDLFQYIDEDGARHTIGSAD
INAYLRDISSADFSAKDYRTWAGSVYAMAALRQLVCESAADTRRHVVATVKEVATLLRNT
PAVCKRCYIHPEVIAAFEAGELQSLLPQRAKRHMKVDEAAFAALLAQVEKRARLAHGAAR
NGGKASLNVESARLATLLTRSSALRKRANARKRADPTA
NT seq 1197 nt   +upstreamnt  +downstreamnt
atgaaaacgatgacacgcaacgcgatcgatgcgatcgcccagggactgtccaccgcgatg
cctgcgggactgcggcacgcggacgacacacggcccggctacacgcgcagaaagctcaga
agcgtgttcgtctatttcgatctggacggccgacgcatcgacgacgaatcgcagattgcg
cgcatcaacgcgctcgcgataccgcccgcctacaccgatgtctggatctgccccgacccg
cgcggccacatccaggcgacgggccgcgatgcgcggggccgcaagcagtaccgttaccac
ccgcaatggcgcgaaacgcgcgacgccgacaagttcggccgcatggccgcgttcgggcac
gcgctgccgaagatccgcgcgcgagtcgcacgcgatctcgcgcgtgaaggcatgccgcgc
gagaaggtgatcgcggccgtcgtgcatctgctcgatacgacgctgatccggatcgggagc
gtcgaatatgcacgcgacaaccagtcctatgggctcaccacgctgcgcaagaagcacgtc
aagattcgcgcgggcgaagtgcgtttccgttttgcgggaaaaagcggcatcgagcacgac
gtgagcgtcgacaatgcgcgcgtcaagcgcatcgtgcgcaagtgcgcggagttgccgggc
cacgacctcttccagtacatcgacgaagacggcgcgcgccatacgatcggctcggccgac
atcaacgcgtatctgcgcgatatcagcagcgcggacttttcggcgaaagactatcgcacg
tgggcaggcagcgtgtatgcgatggcggcgctgcgccagctggtgtgcgaaagcgccgcc
gacacgcgccgtcacgtcgtcgcgaccgtgaaagaagtggccacgctgttgcgcaacaca
cctgctgtctgcaagcgctgctatatccacccggaggtgatcgccgcgtttgaagcgggc
gaattgcaaagcctgctgccgcagcgtgccaagcgtcacatgaaggtcgacgaagcggca
ttcgccgccttgctcgcacaggtcgaaaagcgcgcgcggctggcacacggcgccgcgcgc
aacggcggcaaggcgtcattgaacgtcgaaagcgcgcggctcgctacgctgctcacccgg
tcgagcgcactgcgcaagcgggcaaacgcacgcaagcgcgccgaccctaccgcctga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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