KEGG T03931: BBCT

Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043: BBCT_0348

Entry

BBCT_0348         CDS       T03931

Name

(GenBank) ribonuclease H

K03469

ribonuclease HI [EC:3.1.26.4]

Organism

bcat Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043

Pathway

bcat03030

DNA replication

Brite

KEGG Orthology (KO) [BR:bcat00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BBCT_0348
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bcat03032]
    BBCT_0348
Enzymes [BR:bcat01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.4  ribonuclease H
     BBCT_0348
DNA replication proteins [BR:bcat03032]
Eukaryotic type
  DNA Replication Elongation Factors
   RNase H
    BBCT_0348
Prokaryotic type
   Elongation factors (bacterial)
    RNase H
     BBCT_0348
   Elongation factors (archaeal)
     BBCT_0348

SSDB

Motif

Pfam:

RNase_H DUF6348 DUF4643

Other DBs

NCBI-ProteinID:

BAR01316

Position

complement(427773..429053)

AA seq 426 aa
MTITVSTDGSALGNPNGPMGWGWADHELATGGKPGHHHEGDCDAGGATNGTNQIGELCAV
LEALRAHPGSEPLVIETDSQYAINCSTTWVHGWKKNGWKNSQKKPVKNADLIRAIDAEIS
KRPGSVKFVWVKGHAGNAGNEKVDELARTYAGDCRSKVREGYLPLEGWQSLLASEYSQGI
DVPDDAQMLLDGKITSDEYHIGRGQGESAGGSLADDLIGVSDPEPRPRSIADMLVEPEGY
PTPDEATLPLPPNGMPAESDEMPEPTTVLATAISDSTPSDTTTSDSTQSDTTAPRKSYAE
MLIKTDYFPREDAENASDGTLQPTQSEQSATRSDETADSLQSPETQESLADAPQSAMQPQ
QSQQPRRKSPSGLSVSGTIRFTPPPNSSPTFDGRLRRIRGYIAVEGYVQGDGTLVLEDAP
FAVKHN

NT seq 1281 nt +upstreamnt +downstreamnt
atgacgattacggtttctacagacggttccgctttgggtaatccgaatggtccgatgggt
tggggttgggccgatcacgaactcgcgacaggcggcaagccggggcaccaccatgagggc
gattgcgacgccggcggagcaacgaacggcaccaaccagatcggcgaactgtgcgcggtg
ttagaggcgctgcgcgcgcatcccggttccgaaccgttggtgatcgaaaccgattcgcag
tatgcgatcaactgttccaccacgtgggtgcatggctggaagaagaacggctggaagaac
tcgcagaagaagccagtgaagaacgcggatttgattcgcgcgatcgacgccgagatttcc
aaacgtcctggatcggtaaaattcgtatgggtcaagggccatgccggcaatgcgggcaat
gaaaaggtggatgagcttgcgcgcacttatgctggcgattgccgttcgaaggttcgcgaa
ggatatcttcccttggagggttggcagtcgctgctggcttccgaatactcgcaaggcatc
gatgttcccgacgacgcccagatgctgctcgacggcaagatcacttcggacgaataccat
atcggacgcgggcagggcgaatctgccggcggctctctggccgacgatctgataggtgtg
tccgatccggaaccgcggccacgttccatagcggacatgctggtggagcccgaaggctac
cccacgcccgacgaggcgacgttgccgctgcctcccaacggaatgccggcagaatccgac
gaaatgccggaaccgaccacagtgcttgccacggcgatatccgactccacgccatcggat
accacgacgtctgactctacgcaatccgataccaccgcaccacgcaaatcgtatgcggaa
atgctgatcaaaacggattatttcccgcgtgaagacgcggaaaacgcatccgacggaacg
ctgcagccaacacagtccgagcaatcggcgacgcggtccgatgaaaccgccgactccctg
caatcaccagaaacacaggaatcgctggcagacgcaccgcaatcggcgatgcaaccgcaa
caatcccagcaaccacgccggaaaagcccttcgggactgtcagtgtcgggtaccattcgt
ttcacgcccccgccaaattccagtcctacgttcgacggcaggctccgccgtattcgcggc
tacatcgcggtggaagggtatgtgcagggcgatggcacactggtattggaggacgcgccg
ttcgcagtcaaacacaattaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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