KEGG   Burkholderia cenocepacia DDS 22E-1: DM39_7047
Entry
DM39_7047         CDS       T03308                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bcen  Burkholderia cenocepacia DDS 22E-1
Pathway
bcen03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bcen00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    DM39_7047 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bcen03400]
    DM39_7047 (ligD)
Enzymes [BR:bcen01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DM39_7047 (ligD)
DNA repair and recombination proteins [BR:bcen03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DM39_7047 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: AIO30538
UniProt: A0A088TZT9
Position
3:972718..975384
AA seq 888 aa
MADKLEPYRRMRRFDATPEPEGAHGRRRAAAGARSKPPARGRQPLRYVIQEHHARRLHYD
FRLELDGTLKSWAVPKGPSVDPSVKRLAVHVEDHPLEYASFEGEIPAGHYGAGSVVVWDE
GTWVPDGGLAGARDGYRAGKLTFRLDGRKLHGGWALVRSGRQEGRQEQWLLIKERDDEAR
DAEGYDVVAQQPGSVHRRAASRPLAPSGIEGAVRAPLPERVAPQLATLVDAPPAHGDWRY
ELKFDGYRILARIAGKGARRHVTLMTREGRDWTAKLRPQRDALAALGVDDAWLDAEAVVL
GEHGLPDFQALQNALGAGRADAVTLFVFDLPYLDGYDLRDAPLTARRALLEPLLADCDPV
RLRFSPDLGDDVATLIANACDTGLEGLIGKRADARYRAGRSPAWIKLKCRRRQEFVIGGY
TEPSGARNGFGALLLGVHEPAPQGTKRRDAGPLRYVGRVGTGFDTRTLDRLAAILRAHER
DAAPFDPPPREWSRTRVHWVEPTLVAECEFAEWTGDGIVRQAAFIALRDDKPAAQIVREV
ARHTATEATMDERNTTDGARDGAQHDGGATRARTRRSTGAQSRAGTPRGEAAPDQVGRVR
ITHPERVVDPQHGTRKIDLAHYWEWVAPWLLPDLAGRPVSLVRAPEDITGELFFQKHADR
REIPYVARHAGLDPGHGPLLTIDSVDALVGAAQMGTVELHTWNAHVSNIERPDRIVFDLD
PDPALPWRAMIDAAQLVRGLLDELGLVSFCKTSGGKGLHVVVPITRHAGWDEVKDFSRAV
AQHVAAALPDRFTATMGPRNRRGKIFIDYLRNGRGASTIAAYSVRARPGMGVSVPIGWDE
VPDTTGGAQWTIDTLYERLEHLARDPWEDYANTRQRITARMRARLATS
NT seq 2667 nt   +upstreamnt  +downstreamnt
atggccgacaagctcgaaccctatcgccggatgcgccgcttcgacgcgacgccggagccc
gaaggcgcgcacggccggcgccgcgcggcagccggcgcgcggtcgaagccgcccgcgcgc
ggccggcagccgttgcgctacgtgatccaggaacatcacgcgcgccgcctgcattacgac
ttccgtctcgagctcgacggcacgctgaagtcctgggcggtgccgaaagggcccagcgtc
gatccgtcggtgaagcgcctcgcggtgcatgtcgaggatcatccgctcgaatatgcgtcg
ttcgagggcgagatcccggccggccattacggcgccggttcggtcgtcgtctgggacgaa
ggcacgtgggtgccggacggcgggctggccggcgcacgcgacggctatcgtgcgggcaag
ctgacgttccggctcgacggccggaagctgcacggcggctgggcactggtgcgcagcggc
cggcaggaagggcggcaggagcaatggctgctgatcaaggaacgcgacgacgaggcgcgc
gacgcggagggctatgacgtcgtcgcgcagcagccgggcagcgtgcatcggcgcgccgct
tcgcgcccgctcgcgccgtccggcatcgaaggcgcggtgcgcgcgccgctgcccgagcgc
gtcgcgccgcagctcgcgacgctggttgacgcgccgcccgcgcatggcgactggcgctac
gaactgaagttcgacggctaccggatcctcgcgcgcatcgcgggcaagggcgcgcgacgg
cacgtgacgctgatgacgcgcgaagggcgcgactggaccgcgaagctgcggccgcagcgc
gacgcgctcgcggcgctcggcgtcgacgacgcgtggctcgacgccgaggccgtggtgctc
ggcgagcacgggctgcccgatttccaggcgctgcagaacgcgctcggcgcggggcgcgcg
gatgccgtcacgctgttcgtgttcgacctgccctatctcgacggctacgacctgcgcgat
gcgccgctgaccgcgcgccgcgcgctgctcgaaccgctgctcgccgactgcgacccggtg
cggctgcgcttttcgcccgatctcggcgacgacgtcgcgacgctgatcgcgaacgcgtgc
gacacgggcctcgaaggcctgatcggcaagcgcgcggacgcgcgctatcgcgcggggcgc
tcgccggcgtggatcaagctgaagtgccggcgccggcaggaattcgtgatcggcggctat
accgagccgtcgggcgcccgcaatggtttcggcgcgctgctgctcggcgtgcacgagccg
gcgccgcagggcacgaagcgacgcgacgccgggccgctgcgctatgtcggccgcgtcggc
accggcttcgacacgcgcacgctcgaccggctggccgcgatcctgcgcgcgcacgaacgc
gacgcggcgccgttcgatccgccgccgcgcgagtggtcgcgcacgcgcgtgcactgggtc
gagccgacgctcgtcgccgaatgcgagttcgccgaatggaccggcgacggcatcgtgcgc
caggcagcgttcattgcgctgcgcgacgacaagccggcggcgcagatcgtcagggaggtt
gcacgacacaccgcaacggaggcaacgatggacgagcgcaacacgacggatggcgcgcgc
gacggcgcgcagcacgacggcggcgcgacgcgcgcgcgaacccgacgcagcacgggggcg
cagtcgcgcgccggcacgccccgcggcgaggccgcgcccgatcaggtcggccgcgtgcgc
atcacccatcccgagcgggtggtcgatccgcagcacggcacccgcaagatcgatctcgcg
cactactgggaatgggtcgcgccgtggctgctgcccgatctcgcggggcggccggtgtcg
ctggtgcgcgcgccggaggacatcaccggcgagctgttcttccagaagcatgcggatcgc
cgcgagattccgtacgtcgcacggcatgccggcctcgatccgggtcacgggccgctgctg
acgatcgacagcgtcgacgcgctggtcggcgccgcgcagatgggtacggtcgaactgcat
acgtggaacgcgcacgtgtccaatatcgagcgtccggaccggatcgtgttcgacctcgat
cccgatcccgcgctgccgtggcgcgcgatgatcgatgccgcgcagctcgtgcgcggcctg
ctcgacgaactcgggctcgtgtcgttctgcaagacgagcggcggcaaggggctgcacgtg
gtcgtgccgatcacgcggcacgcgggctgggacgaggtgaaggacttctcgcgcgcggtc
gcgcagcatgtcgcggcggcgctgcccgaccgcttcaccgcgacgatggggccgcgcaac
cggcgcggcaagatcttcatcgactacctgcgcaacgggcgcggcgcgagcacgattgcg
gcctactcggtgcgcgcgcggcccggcatgggcgtgtcggtgccgatcggctgggacgag
gtgcccgacaccaccggcggcgcgcagtggacgatcgacacgctgtacgaacgactcgaa
cacctcgcgcgcgatccgtgggaagactacgcgaacacgcggcagcggatcaccgcgcgc
atgcgcgcgcggcttgcgacatcgtga

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