KEGG   Burkholderia cepacia ATCC 25416: APZ15_01250
Entry
APZ15_01250       CDS       T04772                                 
Name
(GenBank) RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
bcep  Burkholderia cepacia ATCC 25416
Pathway
bcep03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bcep00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    APZ15_01250
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bcep03019]
    APZ15_01250
Enzymes [BR:bcep01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     APZ15_01250
Messenger RNA biogenesis [BR:bcep03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     APZ15_01250
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 P-loop_SecA Ric8 DegT_DnrJ_EryC1 Sacchrp_dh_NADP CMS1 CARD_2
Other DBs
NCBI-ProteinID: ALK16543
UniProt: A0A806VCB3
Position
1:266023..267465
AA seq 480 aa
MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP
QRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRD
IERLIKREIPQEVIAGFEPDPNAKPEPIQQRRGQQQPRGGGGGGGNRQPRAGGSGQPAAK
RDGNAQPKASQQKAAKPRTQGGAGGSGGRPAGGGNGARPANGNAAHPNRNRSSRSGQRGH
NT seq 1443 nt   +upstreamnt  +downstreamnt
atgtctttcgaatctctcggcctggccgaaccgctcgtcaaggcggtcaacgagctcggc
tatacgtcgccgactcccatccagcagcaggcgatccctgccgtcctcggcggcggcgac
ctgctcgccggtgcgcagacgggcaccggcaagacggcaggcttcacgctgccgatcctg
cagcgcctgcacacgttctacgccgagcatcgcggcgcgaagcgcgcggtgcgcgcgctg
atcctcacgccgacgcgcgaactcgccgcccaggtcgaggaaagcgtccgtgcctacagc
aagtacctgaagctgcgctcgaccgtgatgttcggcggcgtcagcatcaatccgcagatc
gacgcgctcaagcgcggtgtcgacatcgtcgtcgcgacgccgggccgcctgctcgatcac
atgcagcagaagacgatcgacctgtcggacctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagctgccgccg
cagcgccagaacctgctgttctcggccacgttctccgacgagatcaaggcgctcgccgac
agcctgctcgattcgcccgcgctgatcgaggtcgcacgccgcaacacgaccgccgagagc
gtcgcgcagaagatccacccggtcgaccgcgaccgcaagcgcgaactgctcacgcacctg
atccgcgaacacaactggttccaggtgctcgtgttcacgcgcacgaagcacggcgcgaac
cggcttgccgagcagctgacgaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcccgcacgcgcgcgctggcggagttcaagaacagcacgctgcaggtgctc
gtcgcgaccgatatcgccgcgcgcgggatcgacatcgaccagttgccgcacgtcgtcaac
ttcgacctgccgaacgtgccggaagactacgtgcaccggatcggccgcacgggccgcgcg
ggcgcgaccggcgaagccgtgtcgctcgtgtgcgtcgacgaaaagcagctgctgcgcgac
atcgagcggctgatcaagcgcgagattccgcaggaagtgatcgcgggcttcgaacccgat
ccgaacgcgaagccggagccgatccagcagcgccgcgggcaacagcagccgcgcggcggt
ggcggcggtggcggcaatcgccagccgcgtgcgggcggctcaggccagccggccgcgaaa
cgcgacggcaacgcacagccgaaagcatcgcagcagaaggccgcgaagccgcgcacgcaa
ggcggcgccggcggcagcggcggacgcccggcgggcggcggcaatggcgcacgccccgcg
aacggcaacgctgcgcacccgaaccgcaaccgttcgtcgcgcagcggccagcgcggtcac
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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