KEGG   Burkholderia cepacia ATCC 25416: APZ15_14685
Entry
APZ15_14685       CDS       T04772                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
bcep  Burkholderia cepacia ATCC 25416
Pathway
bcep03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bcep00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    APZ15_14685
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bcep03400]
    APZ15_14685
Enzymes [BR:bcep01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     APZ15_14685
DNA repair and recombination proteins [BR:bcep03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      APZ15_14685
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter Helicase_C MFD_D3 CarD_TRCF_RID ResIII UB2H Glyco_tran_WecG ERCC3_RAD25_C SNF2-rel_dom AAA_22
Other DBs
NCBI-ProteinID: ALK18948
UniProt: A0A806UTS3
Position
1:3183765..3187235
AA seq 1156 aa
MPDNASTPSASPIARVKSGQRFAFDGAHGSADALAIARYLADNRQDVPLLAVICANAVDA
QRLSQEIRYFSPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT
TALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL
YPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRW
RETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQDAHLVFAGDLEASI
RRFTADTKQRHAFLAHDRERPILEPQRLFLSDEDFFAFAKPFARVVLPAQPAGGWATALP
QLSVDRHADDPLASLRTFVESSGKRVLLTVESAGRRETILQLLAEHHLRPASNDHFAGWL
ESDERFALGVAPLANGFAVPGEGYAVVTETELYGALGRRAGRRRQEQASNVDAMVRDLSE
LKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYSGDSKLYVPVAQLHVISRYSGAD
PDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFSLDPRDYVKFAES
FGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVALLS
PTTLLAEQHTQTFADRFADWPVRIVELSRFKTTKEVNAAIAQINEGSVDIVIGTHKLLSS
DVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAMLEALVPEA
RIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTG
EVLGDKQSGEIHEIGFQLYTDMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADY
CADVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHALVETHRLRIAAKPLGIV
KIDASEAAIGLQFEPNPPIDPMRIIEMVQKHRHIKLAGQDKLRIETRSPDLAIRVSTIKE
TLRALAPRQGAVAAAR
NT seq 3471 nt   +upstreamnt  +downstreamnt
atgccagataacgcttccaccccgtccgcctcgcccattgcccgcgtcaagtccggccag
cgtttcgccttcgacggcgcgcatggttccgccgacgcgctcgccatcgcccgttatctc
gccgacaaccgccaggacgtgccgctcctcgcggtgatctgcgcgaacgcggtcgatgcg
cagcggctctcgcaggaaatccgctacttctcgcccgacgcccgcgtgcgcctgctgccg
gactgggaaacgctgccgtacgacacgttctcgccgcaccaggacctcgtatcggagcgt
ctcgcgacgctgcacgatctcggcgagggccgctgcgacatcctgctcgtgcccgcgacc
accgcgctgtaccggatgccgcccgcgtcgttcatggccgcgtacacgtttgcattcgcg
cagggcgagcggctcgacgaggcgaagctgaaggcgcagctcacgctggccggctacgag
cacgtgagccaggtcgtgcggcccggcgaatactgcgtacgcggctcgctgatcgacctg
tacccgatgggctcgccgctgccgtaccggatcgacctgttcgacgaccaggtcgactcg
atccgcgcgttcgaccccgacacgcagcgcagcctctacccggtgcgcgacgtgcgcctg
ctgccgggccgcgagtttccgttcgacgaagccgcgcgcacggccttccgcagccgctgg
cgcgagacgttcgaaggcgacccgagccgcgcgccgatctacaaggacatcggtaacggc
gtgccgtcggccggcatcgagtattacctgccgctgttcttcgacgaaaccgccacgctg
ttccactacctgccgcaggatgcgcacctcgtgttcgccggcgatctcgaggcgtcgatc
cgccgcttcacggccgacacgaagcagcgtcacgcgttcctcgcgcacgatcgcgagcgg
ccgatcctcgaaccgcagcgcctgttcctgtccgacgaggatttcttcgcgttcgcgaag
ccgttcgcacgcgtcgtgctgcccgcgcagccggccggcggctgggcgacggcgctgccc
cagctctccgtcgatcgccatgccgacgatccgctcgcgtcgctgcgcacgttcgtcgaa
tcgtccggcaagcgcgtcctgctgaccgtcgaatcggccggccgtcgcgagacgatcctg
caactactcgccgaacaccatctgcgccccgcgtcgaacgaccacttcgcgggctggctc
gagagcgacgaacgcttcgcgctcggcgtcgcgccgctcgcgaacggctttgcagtgccg
ggcgaaggctacgcggtggtcaccgagaccgagctgtacggcgcgctcggccgccgcgcg
ggccgccgccggcaggaacaggcgagcaacgtcgatgcgatggtgcgcgacctgtcggaa
ctgaaggtcggcgacccggtcgtccacgcgcagcacggcatcggccgctacatgggcctc
gtgtcgatggacctcggcgaaggcgagactgaattcctgcatctcgaatactcgggcgac
agcaagctctacgtgccggtcgcgcaattgcacgtgatctcgcgctacagcggcgccgat
cccgacagcgcaccgctgcacgcgctcggctccggccagtgggagcgcgcgaaacgcaag
gccgcgcagcagatccgcgatacggccgccgagctgctgaacctgtacgcgcgccgcgcg
gcccgcgaaggccacgcgttctcgctcgatccgcgcgactacgtgaagttcgccgagagc
ttcggcttcgaggaaacgcccgaccaggcggcagccatcgcggccgtgatcggcgacatg
acgagcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgag
gtcgcgctgcgcgccgcgttcatcgcggtgctgggcggcaagcaggtcgcgctgctgtcg
ccgaccacgctgctcgccgagcagcacacgcagaccttcgccgaccgcttcgcggactgg
ccggtgcggatcgtcgagctgtcgcgcttcaagacgacgaaggaagtgaacgcggcgatc
gcgcagatcaacgaaggcagcgtcgacatcgtgatcggcacgcacaagctgctgtcgtcg
gacgtgcagttcaagcgcctcggcctcgtgatcatcgacgaggaacaccgcttcggcgtg
cgccagaaggaagcgctgaaagcgctgcgcgcggaagtcgacgtgctgacgctcaccgcg
acgccgatcccgcgcacgctcgggatggcactcgaggggctgcgcgacttctcggtcatc
gcgaccgcgccgcagaagcgcctcgcgatcaagaccttcgtgcgccgcgaggaagaaagc
gtgattcgcgaggcgatgctgcgcgagctgaagcgcggcggccaggtgtacttcctgcac
aacgaggtcgagacgatcgagaaccgcaaggcgatgctcgaggcgctcgtgcccgaggca
cgcatcgtgatcgcgcacggccagatgcacgaacgcgagctcgaacgggtgatgcgcgat
ttcgtcgcgcagcgcgcgaacgtgctgctgtgcacgaccatcatcgagaccggcatcgac
gtgccgagcgcgaacacgatcatcatgcatcgcgcggacaagttcggcctcgcgcagctc
caccagttgcgcggccgcgtcggccgctcgcaccaccaggcatacgcgtacctgctcgtg
cacgatccgcaggcgctgaccaagcaggcccagcgccggctggaagcgatccagcagatg
gaggaactcggttcgggcttctatctcgcgatgcacgacctcgagatccgcggcaccggc
gaggtgctcggcgacaagcagtcgggcgagatccacgagatcggcttccagctttatacg
gacatgctgaacgacgcggtgaaggcgctgaagaacggcaaggagcccgacctcaccgcc
ccgctcgccgcgacgacggaaatcaacctgcatgcgccggcgatcctgccggccgactac
tgcgcggacgtgcaggagcggctgtcgctgtacaagcggctcgcgaactgcgagcacggc
gacgcgatcgacggtatccaggaagaactgatcgaccgcttcggcaagctgccgccgcag
gcgcacgcgctggtcgagacgcaccggctgcggatcgccgcgaagccgctcggcatcgtg
aagatcgacgcgagcgaggccgcgatcgggctgcagttcgagccgaatccgccgatcgat
ccgatgcggatcatcgagatggtgcagaagcaccggcacatcaagctcgcgggccaggac
aagctgcggatcgagacgcgctcgcccgacctcgcgatccgcgtgtcgacgatcaaggaa
acgctgcgcgcgctcgccccgaggcagggcgcggtggccgcggcgcgctga

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