KEGG   Candidatus Baumannia cicadellinicola BGSS: IM45_443
Entry
IM45_443          CDS       T03277                                 
Name
(GenBank) Transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
bcib  Candidatus Baumannia cicadellinicola BGSS
Pathway
bcib03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bcib00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IM45_443
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bcib03021]
    IM45_443
   03019 Messenger RNA biogenesis [BR:bcib03019]
    IM45_443
Transcription machinery [BR:bcib03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     IM45_443
Messenger RNA biogenesis [BR:bcib03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     IM45_443
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA AAA_22 AAA_25
Other DBs
NCBI-ProteinID: AIN47100
UniProt: A0A088MXK3
Position
complement(235488..236747)
AA seq 419 aa
MNLTELKNTPVSELVTIGEKMGLENLARMRKQDIIFATLKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLMQNIAQSITYNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNIEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLMNKLAMTKTNDEFFDMMKRY
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaaccttaccgaattaaaaaatacgccagtttcggagttagtcacaatcggcgagaag
atggggctcgaaaacctagcccgcatgcgtaaacaagacatcatcttcgccacacttaag
caacatgcaaaaagtggagaagatatcttcggcgatggcgtactggaaatactgcaagac
ggatttggctttttgcgctctggtgacagttcttacctagccggtccggatgatatatat
gtttcccccagccagattcgccgttttaacctgcgtaccggcgatactatttctggaaag
attcgtccgccaaaagaaggcgagcgctattttgcgctgttgaaggtaaacgaggtaaac
tacgataagccagaaaatgcccgtaataagattttatttgaaaatctgacgccattacac
gctaactcgcgtctacgcatggagcgtggaaatggttcgacggaagatttgacggcccgt
gtactagacttggcatcacctattggacgtggtcaacgtggtttaatagtagcaccgccg
aaagcaggtaaaacaatgctgatgcaaaatattgcacaaagtattacctataactatcct
gactgcgtactaatggtcttgttaatagacgaacgtccagaagaagtaacagaaatgcag
cggttagttaaaggtgaagtgatagcgtcaacatttgacgagccagctacgcgccatgtg
caagtagccgaaatggtgatcgagaaagcaaagcgcctcgttgagcacaaaaaagatgtc
atcatcttgttagattctattacacgtcttgcgcgcgcctacaatactgtagtccctgct
tcaggcaaagttttgacaggtggtgtagatgctaatgccctgcatcgtccgaaacgtttc
tttggtgcagcacggaatatagaagagggtggcagtttgaccattattgctactgcgctg
attgatactggttcaaagatggacgaagtaatttatgaagaatttaaaggtactggtaac
atggaattacacttgtcgcgtaaaattgccgagaagcgtgttttcccggctatcgattac
aaccggtctggtacccgtaaagaagaattgcttactactcaggaagaactacagaagatg
tggattttacgtaaaataatccatccgatgggtgaaatcgacgcaatggaattcttgatg
aataaattagcgatgactaaaacgaatgatgaattctttgatatgatgaaacgctattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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