KEGG T01527: BCO26

Bacillus coagulans 2-6: BCO26_1265

Entry

BCO26_1265 CDS T01527

Gene name

ligD

Definition

DNA ligase D

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

bck Bacillus coagulans 2-6

Pathway

bck03410	Base excision repair
bck03420	Nucleotide excision repair
bck03430	Mismatch repair
bck03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:bck03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:bck03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:bck03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:bck03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M RNA_ligase DNA_ligase_A_C

Other DBs

NCBI-GI:

336113943

NCBI-GeneID:

10764956

UniProt:

F7Z7D1

Position

complement(1316819..1318660)

AA seq 613 aa
MKPMLPVLKWSLPDTGKWVYEIKYDGYRAILDWTEDGMRLWSRNGKDLLPRFPEIRTFLQ
TLEGRVKGQLPLRLDGELVLLENPYKAGFRELQRRGRMKAEAAAEQAKMRPAHYLVFDLL
MLGGEDMAGKPYLQRKKALENLCETLALPLSPAPGETARVQQIPFTRDASVLKETVKNFN
SEGIVAKQTDSKWEAGKRVETWIKVKNWKTAACFITAYDEKNGYFDVAVFKDGGIFPIGQ
FLFSMNPDEKQILAEAVRKNAANNENGVYTIDPSICVEVFYLEWDGANLREPHFHRFRFD
LSPDACTFEDFRLRNAAIPEEVEVTHPDKPLWKKRHVAKLDFLAYMREISPFMLPFLSDR
LLTVIRYPHGVFGEAFYQKNCPDYAPAFVDTAMHEDIRYIVCNHLKTLMWLANQLAVEYH
IPFQTVNSRFVSEIVFDFDPPSRDAFQLAVEAALLLKQVTDALHLESFVKISGNKGLQVY
IPLPDGQFSWEDTRLFTEFVAAYFISKSPEHFTIERMKKKRGGKLYVDFVQHAEGKTIIA
PYSMRGHEDALVAAPLFWEEVNASLSPYDFTIETVLSRVNRYGCPFARFFACKSGQPFAP
VLAFLKQNKGRPI

NT seq 1842 nt +upstreamnt +downstreamnt
atgaaaccgatgttgccggttttaaaatggtctctgccagatacaggaaagtgggtatac
gaaattaaatatgacggttatcgcgcgatcctcgactggacagaagacggcatgcggtta
tggagccgcaacggaaaagatttgctgccccggtttccggaaatccgcacctttttgcaa
acgcttgaaggccgcgtaaaagggcagcttccgttacggcttgatggcgaacttgtgctg
cttgaaaatccgtataaagctggctttagggagctgcaacgccgcgggcggatgaaagct
gaagcagctgcagagcaggcgaaaatgcgccccgcccattatctcgtatttgatttgctc
atgcttggcggagaggatatggccggcaaaccgtatttgcagcgaaaaaaagcattggaa
aacttatgtgaaacgctcgcgctgccgctctcccccgccccgggcgaaacggcacgggtt
cagcaaatcccgttcacccgtgacgcatcggtcttaaaagagacggtgaaaaattttaac
agtgaaggcattgtcgcaaaacaaacggacagcaagtgggaagcgggaaaacgggttgaa
acatggataaaagtgaaaaattggaagacagccgcctgctttattacggcttacgacgag
aaaaacgggtatttcgatgtcgcagtgtttaaagatggcggcatttttccaatcggccag
tttcttttcagcatgaatccggacgaaaaacaaatcctcgcagaagcggtcaggaaaaat
gccgcaaacaatgaaaacggcgtctacacgatcgatccttcgatttgcgtcgaggtattt
tatttggaatgggacggcgccaacctgcgggaaccgcatttccaccgcttccgctttgat
ctttccccggatgcctgtacatttgaagatttcaggctccgtaacgccgccattccagaa
gaagtggaagtgacacatccggataaaccactatggaaaaagcggcatgtggcaaaactc
gactttcttgcttatatgcgggaaatttccccttttatgctgccgtttctttcggacagg
cttttgaccgtcatccgttacccgcacggcgtcttcggcgaggcattttaccagaaaaac
tgccccgattatgcgcccgcttttgtggatacggctatgcatgaagacatccggtatatt
gtctgcaaccatttaaaaacactgatgtggcttgcgaaccagctggcggtggaataccat
atcccgtttcagaccgtaaacagccgtttcgtcagtgagattgtatttgattttgacccc
ccttcccgggatgcgtttcaacttgcagtagaagcggctttgctgttaaaacaggtgacg
gatgcccttcatttggagagctttgtcaaaatttccgggaataaagggctgcaagtctac
attccattgccggacgggcagttctcatgggaagatacaaggctgttcacggaatttgtg
gctgcttatttcatttctaaatctcctgaacattttacaatcgaacggatgaagaaaaaa
cggggcggaaaattatatgttgatttcgtccagcatgcggaaggaaaaacgatcattgca
ccttattcgatgcgcgggcatgaggatgcgcttgtggcggctccgcttttctgggaagaa
gtaaacgcgtcgctttcgccgtatgactttactattgaaacggtcctttcgcgtgtgaac
cggtacggctgcccgtttgcgcgattctttgcctgcaaaagcggccagccttttgccccg
gtacttgcatttttaaagcagaacaaagggcgccccatatag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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