KEGG   Bifidobacterium dentium Bd1: BDP_0249
Entry
BDP_0249          CDS       T01143                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
bde  Bifidobacterium dentium Bd1
Brite
KEGG Orthology (KO) [BR:bde00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bde03032]
    BDP_0249 (topA)
   03400 DNA repair and recombination proteins [BR:bde03400]
    BDP_0249 (topA)
Enzymes [BR:bde01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     BDP_0249 (topA)
DNA replication proteins [BR:bde03032]
 Prokaryotic type
  DNA Topoisomerases
   BDP_0249 (topA)
DNA repair and recombination proteins [BR:bde03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      BDP_0249 (topA)
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim Toprim_4 SBP_bac_3
Other DBs
NCBI-ProteinID: ADB08929
UniProt: D2Q7V8
Position
315803..318817
AA seq 1004 aa
MATGSKLVIVESPTKARKIGGYLGSDYTVMASVGHIRDLAQPSQVPSADKAKFGKFGVDV
EDGFKPYYIVDGDKKKTVSELKSALKKADTLYLATDEDREGEAIAWHLVQTLKPKVSIKR
MVFHEITPEAIKASLNNTRDVDGAMVDAQETRRILDRLYGYELSPVLWRKVGPGLSAGRV
QSVATRLIVERERERMAFVRAPYWDVTATLEAMGAEGDNVAFDSRMVSLDGRRLAGSKDF
GEDGLLTAAGAKDNVVQLDETQARALAQSLEFATFTVTSMESKPYRRRPLPPFTTSTLQQ
TAGNRLSMSSRQTMRAAQGLYENGYITYMRTDSVTLSQEAIAAARSAVKSHFGDTFLSDA
PKQYATKTAGAQEAHECIRPAGAQFRDPDEVAKKVPADQARLYALIWQRTLASQMADATG
STATVRLSASAGDQGEAVFQASGTVIEFPGFMKATGEGRHASSDRATDKTAEQSVKANDD
NASLPPMRPGDELAATEVAADGHETQPPARYTEASLVKTLEAKEIGRPSTYASIISTIID
RGYVYERGRALIPSWLAFSVVKLLETKFPKYVDYQFTADMENGLDQIAHGMETGKDWLTS
FYFGSGEGAAQSQDEAHAGLQQQVAQLGEIDARAINTIEIGDGLHVRVGRYGPYLEDVND
LDGEGNPKRASLPDTLAPDELTVEVGHDLIEHHSGGPRELGKDPVSGGTVEVRNGRFGPY
VALIVPQSEAAGDAAAAQAKPQRGSKKAAADRPKMASLFKTMSPESLTLEDALKLLSLPR
EVGTYEEANAETGELQQVTVMANNGRYGPYLTKTGADGKSDTRSLASEDEIFTVDLDKAK
ELFSQPKYGRGRGRGAAKPPLRDLGVDPETQKHVTIKEGFYGAYITDGETNRTLPKQYAA
ESIEPAEAFRLLAEKRAQGPSKRGRGRKASAKKTTAKSTKAGKPNAIEKARADRRAKVRE
LADQGWANTRIAKEIGSTAATVKADIDWLTANEGYFRPEVVPAR
NT seq 3015 nt   +upstreamnt  +downstreamnt
atggctaccggcagcaagctcgttattgtggagtctcccaccaaggccaggaaaatcgga
ggatatctcggctccgactatacggtcatggcatcggtgggccacattcgcgaccttgcg
cagcccagccaggtgccgtccgccgacaaggccaagttcggcaagttcggcgtcgatgtg
gaagacggcttcaagccgtactacatcgtggacggtgataagaagaaaaccgtctccgaa
ctgaaaagcgcactgaaaaaggccgataccctctatctcgcaaccgatgaggatcgcgag
ggggaggccatcgcatggcatctggtgcagacgctcaagccgaaggtgtcgatcaagcgc
atggtgttccacgagatcacgccggaggcgatcaaggcatcgctgaataacacccgcgat
gtggacggcgccatggtcgacgcgcaggagactcgccgtatcctggaccgcctgtacggc
tacgagctgtctccggtgctgtggcgcaaggtggggccgggcctttccgcaggccgcgtg
cagtccgtcgccacccgtctgatcgtcgagcgtgagcgtgagcgcatggcgttcgtgcgt
gccccgtattgggacgtgaccgccacgttggaggcgatgggcgccgaaggtgacaatgtg
gccttcgattcgcgcatggtgtcgcttgacggccgtcgtttggccggttccaaggatttc
ggtgaggacggtctgctgaccgccgccggtgccaaggataatgtcgttcagcttgacgag
acgcaggcccgtgcgcttgcgcagtcgctggaattcgcgacgttcaccgtcacgtcgatg
gaatcgaagccgtaccgtcgccgtccgcttccgcctttcaccacgtcgacgttgcagcag
accgcaggcaatcgcctgtcgatgagctcgcgtcagaccatgcgtgcggcgcagggattg
tatgagaacggctatatcacgtatatgcgtaccgattcggtgacactgtcgcaggaggcc
atcgcggccgcccgttcggcggtgaagtcgcatttcggcgacacgttcctgtcagatgcg
ccgaagcagtatgccaccaagaccgccggtgcgcaggaggcccacgaatgtattcgtccg
gccggcgcgcagttccgtgatccggacgaagtcgccaagaaggtgcctgccgatcaggcc
cgtctgtatgcgttgatttggcaacgtacgcttgcctcgcagatggccgatgccaccggt
tccaccgccaccgtgcgtttgtccgcatcggctggagaccaaggtgaggccgtgttccag
gcttccggtacggtcatcgagttcccgggctttatgaaggccacaggggagggacgtcac
gcttcctccgacagggccaccgacaaaaccgccgagcagtccgtcaaagcgaacgatgat
aacgcttccctgccgccgatgaggccgggcgacgagcttgccgcgacggaagtcgccgcc
gacgggcatgaaacccagcctccggcgcgatacaccgaagcctcgctcgtcaagacgctt
gaagccaaggagattggtcgcccgtccacatatgcgagcatcatctccaccatcatcgat
cgcgggtacgtgtatgagcgcggtcgtgcgctgattccgtcctggctggctttctccgtg
gtcaagttgctggagacgaagtttccgaagtatgtggactaccagttcaccgccgatatg
gagaatggtctggaccagattgcccacggcatggaaaccggcaaggattggctgaccagc
ttctacttcggttccggagaaggcgcggcgcagtctcaggatgaggcgcatgccggtctg
cagcagcaggtcgcgcagcttggcgaaatcgatgctcgcgccatcaatacgattgagatc
ggcgacggtctgcatgtgcgcgtcggtcgttacggcccgtatttggaagatgtgaacgat
ttggatggcgaaggcaatccgaagcgcgcgtcgttgccggatacccttgctccggatgag
ctgacggtggaagtcggccatgatctgatcgaacatcattccggtggtccgcgtgaactc
ggcaaggatccggtttccggcgggaccgtggaagtgcgtaacggccgtttcggaccgtat
gtcgcgctgattgtgccacagtcggaagctgccggagatgccgccgctgcgcaggccaag
ccgcagcgtggctccaagaaggccgcggcggatcgcccgaagatggcatcgctgttcaag
acgatgagccctgaatcgttgacgttggaagatgcgctgaaactgctgagcctgcctcgt
gaggtcggcacgtacgaggaggcgaatgccgaaaccggcgaactgcagcaggtcacggtg
atggcgaacaacggccgctacggcccgtacctgaccaagaccggcgccgacggcaaatcc
gacacgcgttcgctcgcctcggaggatgagattttcacggttgacctcgataaggccaag
gagctgttctcgcagccgaagtacggtcgtggtcgcggccgtggagccgccaagccgcca
ctgcgtgatctgggcgtcgatccggagactcagaagcatgtgaccatcaaggaaggtttc
tacggcgcgtatatcaccgatggcgaaacgaaccgtacgttgccgaagcagtatgcggcc
gaatcgatagagccggccgaagcgttcaggctgttggccgagaagcgtgcgcaggggcca
tcgaaacgtggtcgtgggcgtaaggcctccgccaagaagacgactgccaagagcacaaag
gccggtaagccgaacgcaatcgaaaaggcgcgtgccgatcgccgtgccaaggtgcgcgaa
ctggccgatcagggctgggcgaatacgcgtattgcgaaggagatcgggtctacggccgcc
acagtcaaggccgatatcgactggctcaccgccaatgagggatatttccgccccgaggtg
gtccccgcccgttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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