KEGG   Bifidobacterium dentium Bd1: BDP_1175
Entry
BDP_1175          CDS       T01143                                 
Symbol
ruvB
Name
(GenBank) Holliday junction DNA helicase ruvB
  KO
K03551  holliday junction DNA helicase RuvB [EC:5.6.2.4]
Organism
bde  Bifidobacterium dentium Bd1
Pathway
bde03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    BDP_1175 (ruvB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bde03400]
    BDP_1175 (ruvB)
Enzymes [BR:bde01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BDP_1175 (ruvB)
DNA repair and recombination proteins [BR:bde03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     BDP_1175 (ruvB)
    RecFOR pathway proteins
     BDP_1175 (ruvB)
SSDB
Motif
Pfam: RuvB_N AAA_lid_4 RuvB_C AAA AAA_5 AAA_16 TIP49 AAA_14 AAA_22 Mg_chelatase nSTAND3 AAA_3 AAA_18 TsaE Sigma54_activ_2 RNA_helicase NTPase_1 Zeta_toxin AAA_17 Rad17 IstB_IS21 AAA_33 AAA_25 NB-ARC POTRA_2 AAA_19 AAA_28 NACHT
Other DBs
NCBI-ProteinID: ADB09803
UniProt: D2QAG7
Position
complement(1321707..1322780)
AA seq 357 aa
MTNDSAFEQSNTGANEESLRMVSASPVGNEPVSDEELRPHILDGFIGQPRLKAQLQLFLD
AARKREVPPDHILLAGPPGLGKTTLAMIVANELGVPIRVTSGPAIQHAGDLASILSSLDA
GEVLFIDEIHRLPRAAEELLYIAMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGM
LPSPLRARFGFTAHLDFYPHDELEKLIERSSVVLGVLLEEGSAHQLAMRSRGTPRIANRL
LRRVRDWAIVHDLESVHPEDVKQALALYQIDTEGLDRLDIAVLKAIVTNFSGGPVGLNNL
SAMVGEESETVETVCEPYLVREGFLIRTPKGRVATRKAWEHLGLRPDDSQLDVSKLA
NT seq 1074 nt   +upstreamnt  +downstreamnt
atgacgaacgactccgcattcgagcagtcgaataccggtgccaatgaggaatccttgcgt
atggtgtcggcctcacctgtcggcaatgagccggtcagtgacgaggagctgcgtccacac
atactcgatggcttcatcggacagccacgcctcaaggcccagcttcaactgttcctggac
gcagcacgcaagcgtgaagtcccgccggaccatattctgcttgcgggtcctcctggcctg
ggaaaaaccacattggcgatgatcgtggccaacgaacttggcgtaccgattcgcgtcacc
tccggaccagccatccagcatgccggcgatctcgcctcgattctcagttctctggatgcc
ggagaggtgttgttcatcgacgaaatccaccgtctgcctcgtgcggccgaagagctgctg
tatatcgccatggaggatttccgcgtcgacgtgatggtgggtaagggaccgggagcctca
tccattccgctgaccttgcctcgattcacggtcatcggggcgaccacgcgtgagggcatg
ctaccttcaccgttgcgcgcgcgcttcggtttcaccgcccatcttgatttttacccgcat
gacgagcttgaaaaactgatcgagcggtcatcggtcgtactgggtgtcctgcttgaggag
ggatcggcccaccagttggccatgcgctcccgcggcacgccgcgtatcgctaacagactg
ctacgtcgtgtcagggattgggccatcgtgcatgatcttgagtcggtgcatcccgaagat
gttaagcaggccctcgcactgtaccagatcgacaccgaaggacttgatcggctcgacatt
gccgtgctgaaggccatcgtcaccaacttcagtggcggtccggtgggtctgaacaaccta
tccgccatggtcggcgaggaatcggagaccgtggaaaccgtttgcgaaccgtatctggta
cgtgaaggattcctcatcagaactcccaagggccgggtggcgacgcgcaaagcttgggaa
catctcggtctcagacctgatgattctcagcttgatgtcagtaagctggcatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (28)   
   Pfam (28)   
All databases (38)   

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