KEGG   Brachypodium distachyon (stiff brome): 100821357
Entry
100821357         CDS       T01717                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 9B
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03020  RNA polymerase
bdi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100821357
  09124 Replication and repair
   03420 Nucleotide excision repair
    100821357
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bdi03021]
    100821357
   03400 DNA repair and recombination proteins [BR:bdi03400]
    100821357
Transcription machinery [BR:bdi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     100821357
DNA repair and recombination proteins [BR:bdi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      100821357
SSDB
Motif
Pfam: RNA_POL_M_15KD TFIIS_C CpXC zinc_ribbon_4
Other DBs
NCBI-GeneID: 100821357
NCBI-ProteinID: XP_003579291
UniProt: I1IHJ8
Position
4:complement(3935951..3937918)
AA seq 114 aa
MSAMKFCRECNNILYPKEDRDQKVLLFACRNCDHQEVADNNCVYRNVVHHSAGEFTQVLQ
DVAGDPTLPRTKEVRCAVCGHGEAVFFQATARGEEGMTLFFVCCNPSCGHRWRE
NT seq 345 nt   +upstreamnt  +downstreamnt
atgagtgccatgaagttttgccgtgaatgcaacaacatactgtatcccaaggaggacagg
gaccagaaggtgctcctcttcgcctgcaggaactgcgaccaccaggaggtcgcagacaac
aactgcgtctaccggaatgtggtgcaccacagcgcgggagaattcacccaggtgctccag
gacgttgccggtgacccgacacttccccgcaccaaggaagtccgatgtgctgtctgtggc
catggtgaagctgtcttcttccaggccaccgccaggggggaggaaggaatgacgctgttc
ttcgtctgctgcaacccgagctgcggtcatcggtggagggagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (20)   

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