KEGG T01717: 100827481

Brachypodium distachyon: 100827481

Entry

100827481 CDS T01717

Definition

E3 ubiquitin-protein ligase COP1-like

Orthology

K10143

E3 ubiquitin-protein ligase RFWD2 [EC:6.3.2.19]

Organism

bdi Brachypodium distachyon

Pathway

bdi04120	Ubiquitin mediated proteolysis
bdi04712	Circadian rhythm - plant

Class

Genetic Information Processing; Folding, sorting and degradation; Ubiquitin mediated proteolysis [PATH:bdi04120]
Organismal Systems; Environmental adaptation; Circadian rhythm - plant [PATH:bdi04712]

SSDB

Motif

Pfam:

WD40 zf-C3HC4 zf-C3HC4_2 zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-RING_5 Carb_bind zf-RING_6 zf-rbx1

Other DBs

NCBI-GI:

357137921

NCBI-GeneID:

100827481

Position

AA seq 670 aa
MGDSSVPGALVPTVPKPEPARSGDGSAAAQAVVARQQAEEAGAASRSPEVEEEEEQALAD
GEAAAAAGAPDGDLLCPICMGVIKDAFLTACGHSFCYMCIVTHLGHKSDCPCCGNYLTKA
QLYPNFLLDKVVKKMSARQIAKTASPVDQFRHVVQQGNDMTVKELDSLMTLIAEKKRQME
QQESETNMQILLVFLHCLRKQKLEELNEIQTDLQYIKDDISSVERHRLDLYRTKERYSMK
LRMLLDEPAASKMWSSPTDKPSSLFASNSRAPLSASSQGGLQNRRLDLRHQRRVQAQFNE
LQEYYLQRRRNGAQSRRQEERDTVMMNKEGYHAGLDDFQSVLTTFTRYSRLRVIAELRHG
DLFHSPNIVSSIEFDRDDELFATAGVSKRIKVFEFSTVVNEPSDVHCPVVEMATRSKLSC
LSWNKYSKNVIASSDYEGIVTVWDVQTRQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD
CKVKVWCTKQEASAINIDMKANICSVKYNPGSSYYVAVGSADHNIHYFDLRNPSTPLHIF
GGHKKAVSYVKFLSNNELASASTDSTLRLWDVKENCPVRTFRGHKNEKNFVGLSVSNDYI
ACGSETNEVFVYHKAISKPASSHRFVSSDVDDADDDPGTYFISAVCWKSDSPTMLTANSQ
GTIKVLVLAP

NT seq 2013 nt +upstreamnt +downstreamnt
atgggggactcatcggtgccgggcgcgctggtgccgacggtgccgaagccggagccggcg
cggtctggggacgggtccgccgccgcgcaagccgtggtggcgcggcagcaggcggaggag
gcgggcgcggcctcgcggtcgccggaggtggaggaggaggaggagcaggcgctggcggac
ggcgaggcggcggcggcggcgggcgcgccagacggggacctgctgtgcccgatctgcatg
ggcgtcatcaaggacgccttcctcaccgcctgcggccacagcttctgctacatgtgcatc
gtcacgcacctcggccacaagagcgactgcccttgctgcggcaactacctcaccaaagcg
cagctctaccccaacttcctcctcgacaaggtcgtgaagaaaatgtcggcccgccaaatt
gcaaagacagcatctcccgttgatcaatttcgacatgttgtgcaacagggaaacgatatg
acagttaaagagctagacagccttatgactttgattgctgagaagaagagacaaatggaa
caacaagaatccgagacaaatatgcaaatattgctagtcttcttgcactgccttagaaag
caaaaactggaagagttgaatgagattcaaactgatctacagtacatcaaagatgatata
agcagtgtggagagacataggttagatttgtatcgaacaaaagaaagatactccatgaag
ttgcgcatgcttttggatgaacctgccgcatcaaagatgtggtcctctcctacggacaaa
cctagcagtctctttgcctccaattctcgggcaccgcttagtgcatcatctcaagggggt
ttacagaataggaggcttgatttgagacatcagaggcgagttcaagcacagtttaacgag
cttcaagaatactatctgcaaagacggcgtaatggagcacagtcacgcaggcaggaggaa
agagacaccgttatgatgaataaagaaggttatcatgcgggtcttgatgattttcagtca
gttctaacgacattcactcgatacagtcgcttgcgggttattgcggaacttagacatgga
gacctgtttcactctccaaacattgtttcgagtattgaatttgatcgtgatgatgagcta
ttcgctactgcaggagtctcgaagcgcattaaagtctttgaattttctacagttgttaat
gagccatcagatgtccactgcccagtcgttgaaatggctaccagatctaaactcagctgt
cttagctggaacaagtactcgaagaatgttatagcaagcagtgattatgagggtatagtt
actgtttgggacgttcaaactcgccagagtgtgatggagtatgaagagcatgagaaaagg
gcatggagtgttgatttttcacgtacagagccctcaatgctagtatctgggagtgatgat
tgcaaggtcaaagtgtggtgcacaaaacaggaagcaagcgctatcaacattgatatgaaa
gcaaatatttgctctgttaaatataatcctggatcgagctattatgtagcggtcggatct
gctgatcacaatattcattattttgatttacggaatccaagtacacctctccatattttt
ggcgggcacaagaaagctgtctcttatgtgaagttcttgtctaataatgagcttgcatct
gcatcaactgatagcacattgcggttatgggatgtcaaggaaaattgcccagtaaggacc
ttcagagggcacaaaaatgagaagaactttgttgggctgtctgtgagtaacgattatatt
gcttgcgggagtgaaacgaatgaggttttcgtttaccacaaggctatctcaaaacctgct
tccagtcataggtttgtatcctccgatgtggatgatgctgatgatgaccctgggacttat
ttcattagcgctgtctgctggaagagtgatagccctaccatgttaactgctaacagtcag
gggacgattaaagttcttgtgctcgctccttga

All links

Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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