KEGG   Brachypodium distachyon (stiff brome): 100846625
Entry
100846625         CDS       T01717                                 
Name
(RefSeq) transcription initiation factor IIF subunit alpha isoform X1
  KO
K03138  transcription initiation factor TFIIF subunit alpha
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100846625
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bdi03021]
    100846625
Transcription machinery [BR:bdi03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIF
     100846625
SSDB
Motif
Pfam: TFIIF_alpha zf-C3HC4_3 DZR_2 ELL DUF3069
Other DBs
NCBI-GeneID: 100846625
NCBI-ProteinID: XP_010234660
UniProt: I1I3H5
Position
3:complement(22193572..22201179)
AA seq 531 aa
MGSVDLVLKPACEGCGSPSDLYGTGCKHTTLCSSCGKSMALSRARCLVCSAPITNLIREY
NVRANASTDKAFSIGRFVTGLPPFSKKKNAENKWSLHKEGLQGRQLTDKMQEKYNRKPWI
LEDETGQYQFQGHMEGSQSATATYYLLMMQGKEFHAFPAGSWYNFSKVAQYKQLTLEEAE
EKMNKRKTSATGYERWMMKAATNGPAAFGSDIKKLEPTNDGEKESARPKKGKDNEEGNNS
DKGEENEEDEAARKDRLGLSKRGMDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEA
VDIDPEERADLAPEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGRASGQNESDADEDD
EDDDQDDESSPVLAPKQNDQPKDEPVDNSPAKPTPSSGHARSTPPASKSKQKRKSGGDDA
KTSGSAASKKAKVEPDTKTSSIKEEAPSSLKHTSKASASSRNANVSPVTEDEIRTVLLAV
APVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLREDKK
NT seq 1596 nt   +upstreamnt  +downstreamnt
atggggagcgtggacctggtgctgaagccggcgtgcgagggctgcggctccccgtcggac
ctctacggcaccgggtgcaagcacaccacgctctgcagctcttgcggcaagtcgatggcg
ctctcccgcgcccgatgcctcgtctgctccgcccccatcaccaacctcatcagggaatac
aatgtgcgggcaaatgctagcacggataaggcattctctattggaagattcgtcactggt
ttacctcctttctcaaagaaaaagaatgctgagaacaaatggtctcttcataaggagggc
ctgcaaggacggcagcttactgacaaaatgcaggagaaatacaaccggaagccatggatt
ttagaagatgaaactggtcaataccagtttcagggtcatatggagggatcacagtcagca
acagctacatactacttgttaatgatgcagggcaaggaatttcacgcatttcctgctggt
tcctggtataacttcagtaaagttgcacagtacaaacaactgactctggaagaggccgaa
gagaagatgaataagagaaagactagtgcaactggttatgaacgttggatgatgaaagca
gctacaaatgggccagctgccttcggttcagatataaagaaacttgaacctacaaatgat
ggagaaaaagaaagtgctcgtcctaagaaggggaaagataatgaggagggtaataattct
gataaaggtgaggaaaatgaagaagatgaagcagctcgaaaagataggcttgggctctct
aaacgtggcatggatgatgacgaggaaggtggaaaagatctggactttgatttggatgat
gaaattgagaaaggtgatgactgggagcacgaagaaacattcaccgatgatgatgaggct
gtggatatcgacccagaggaacgggctgatttagctcctgaaattcctgctccacctgaa
attaagcaggatgatgaagagaatgaagaagaaggtggtctgagcaagtcaggaaaagaa
ttaaagaagctgcttgggcgtgcttctggacaaaatgagtcagatgcagacgaggatgat
gaagatgatgatcaggatgatgagtcatctccagtgcttgctccaaagcagaatgatcaa
cctaaagatgaacctgttgataacagcccagctaaaccaacaccttcatcaggacatgct
cgcagcacacctcctgcatccaaatccaagcaaaagaggaagtcaggtggtgatgatgcg
aaaacatctgggagtgcagcttcaaagaaagcaaaggtggaaccggataccaaaacatca
tccatcaaagaggaggcgccatcttccttaaaacatacatcaaaggcctctgcttcatca
agaaatgcgaacgtatctcctgtgacagaggatgaaattaggactgttcttcttgcagtc
gctccagtcactacacaagatttagtatccagatttaagtctagactccgaggtccagag
gacaagaacgcctttgctgaaattctgaagaaaatttcgaagatacagaagactaatggt
cacaactatgtcgtccttagagaggataagaagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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