KEGG   Betaproteobacteria bacterium UKL13-2: AEM42_12725
Entry
AEM42_12725       CDS       T04342                                 
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
beb  Betaproteobacteria bacterium UKL13-2
Pathway
beb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:beb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AEM42_12725
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:beb03019]
    AEM42_12725
   03016 Transfer RNA biogenesis [BR:beb03016]
    AEM42_12725
Enzymes [BR:beb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     AEM42_12725
Messenger RNA biogenesis [BR:beb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AEM42_12725
Transfer RNA biogenesis [BR:beb03016]
 Prokaryotic type
  tRNA degradation factors
   AEM42_12725
SSDB
Motif
Pfam: RNase_PH RNase_PH_C PNPase S1 KH_1 KH_2 KhpA-B_KH DNA_pol3_a_NI DUF5813 KH_5
Other DBs
NCBI-ProteinID: AMS33020
UniProt: A0A142LLC4
Position
complement(2848048..2850198)
AA seq 716 aa
MKAIKKTLQYGRHTLTIETGEIARQADGAVLVSLDDTVVLVTCVARRDAKEGQDFFPLTV
DYQEKTFAAGKIPGGFFKREGRPSEKEILTSRLIDRPLRPLFPDGFYNEVQIIATVLSID
PEIDSDIPAMIGASAAVTLAGVPFEGPIGAARVGYIDGQYILNPTKTELETSKLNLIVAG
TNSAVLMVESEAMELPEDVMLGSVVFGHEQQQAVINAILDLADEAGKDSWAWTPPAPPQA
LIDQINAMAANDLNDAFRIKSKGARSEKLSEINKRVIATLCTGEEGAPDKNTVSSLLFAI
ESKIVRGQILNGEPRIDGRDTRTVRPISIRTSVLPRTHGSVLFTRGETQALVVATLGSLK
DSQIIDALQGEYHDRYMFHYNFPPYSTGETGRVGSPKRREIGHGRLAKRALVAVLPSEAE
FGYAMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGVAMGLIKEGSKFAVLTD
ILGDEDHLGDMDFKVAGTEVGITALQMDIKITGITKEIMDVALKQAREGRMHILGLMKQA
VPTARSELSQFAPRIIKIKIHPDKIREVIGKGGSVIQAITRETGTEIDIQDDGTISIACL
SGEAGEAAKQRIEAIAAEIEVGRIYEGPVVRLLDFGAIVQLLPGKDGLLHISQIAHERVN
AVADHLKEGQIVKVKVMEADDKGRVRLSMKALIEPPAKASRSEQAAEVPVGDAPAQ
NT seq 2151 nt   +upstreamnt  +downstreamnt
atgaaagccataaagaaaacactgcaatacgggcgccacacgctcaccatcgaaacgggt
gaaattgcgcggcaggccgacggtgcagtccttgtgtcacttgacgatacggttgtattg
gtcacttgcgtggcgcgcagggatgcaaaggaagggcaggacttttttccgctgacggtt
gattaccaagagaaaacatttgcagccggcaaaatcccgggcggctttttcaagcgtgaa
ggccgtccttcagagaaggaaattttgaccagtcgcttgattgaccgaccacttcgaccg
ctgttcccggatggtttctacaacgaagtccagatcattgccaccgtcctttcgattgat
cctgaaatcgactcagatattccggcgatgataggcgcatctgctgccgtgacccttgca
ggcgtaccgtttgaggggccgattggcgcggcgcgtgtcggttatatcgacggccagtac
attctgaaccccacaaaaaccgagctcgaaacgtctaagctgaatttgattgttgcgggg
accaattctgctgtgttgatggtcgaatcagaagcaatggaactgccggaagacgtcatg
ctgggttcagtggtgtttgggcatgagcagcagcaagccgtcatcaatgccattctagat
ttggctgatgaagcgggtaaagattcatgggcttggacgccgccagcgccgccgcaagca
ttgattgaccagattaatgccatggcggccaacgacctgaatgatgcgttccgcatcaaa
tcaaaaggcgcccgctcggaaaagctatcggagattaacaagcgcgtcattgcgacactg
tgcaccggcgaagaaggtgcgcctgataagaacacggtatcttcattgctgttcgcgatt
gagtcaaaaattgttcgcggacaaattctcaacggcgaaccgcgcatcgatggtcgcgat
acgcgcactgttcgcccgatttcgatccgcacctcagttctgccgcggacccacggctcg
gtactgttcacccgtggcgaaacacaagcgctagtcgtcgcaacgctcgggtcgttgaag
gattcacagattattgatgccttgcagggggagtatcacgaccgctacatgttccattac
aacttcccgccctattcgacaggagagactggacgtgtgggttcgccaaagcgtcgcgaa
attggacacgggcgcttggccaagcgtgcgctcgtcgcagtactaccgagcgaagcggag
ttcggctacgcgatgcgcgttgtatcggagattaccgagtcgaatggctcgtcttcgatg
gcctcggtctgcggcggatgcttgtcgctgatggacgcaggtgtgccgatgaaagcgcac
gttgcaggcgttgcgatggggctgattaaagaaggaagcaagtttgcggtgttgaccgat
attctgggggatgaagatcaccttggcgacatggacttcaaggtcgctggtacggaagtt
ggcattacggcgctgcaaatggatattaagatcaccggtatcaccaaggagatcatggat
gttgcattgaagcaggcgcgcgaagggcgcatgcatatcttggggttgatgaagcaagcg
gtgccaactgcgcgctccgagctttcgcaattcgcgccgcgcattatcaaaattaagatt
catccggacaaaatccgtgaagttatcggcaaaggcggctccgttattcaagcgatcact
cgcgaaaccggtaccgagatcgatatacaagacgacggcacaatttctatcgcttgcctc
tccggtgaagctggcgaagcggccaaacagcgtattgaggcaatcgcggcagaaattgaa
gttggccgtatttacgaaggcccggtcgtacgcctgctggacttcggtgccatcgttcaa
ctcctgcccggtaaagatggtctgctacacatctcgcagattgcccatgagcgagtaaat
gccgtggctgatcacctgaaagaaggccagatcgtcaaagtgaaggttatggaagcagac
gataagggtcgtgtacgcttgtcgatgaaggcgctgattgagccgccagcgaaggcgtcc
cgatcagagcaagcggccgaagtgccggtgggcgacgcgccagcgcagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (31)   

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